View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_117 (Length: 272)
Name: NF9533A_low_117
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_117 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 13 - 272
Target Start/End: Complemental strand, 16569666 - 16569407
Alignment:
| Q |
13 |
gaacgtcaaaatgtacatgtttactatttacgctaatgtaaactaatttctgtgttttttctcgcttatccgtgctttgtctccactagttatatagtct |
112 |
Q |
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| T |
16569666 |
gaacgtcaaaatgtacatgtttactatttacgctaatgtaaactaatttctgtgttttttctcgcttatccgtgctttgtctcaaatagttataaagtct |
16569567 |
T |
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| Q |
113 |
tctttgtttccctcatcaattatagttgtttacactatctgcaggaaacatttcacaatcacaatggtagcgaagaatccaaaggtgatgcagaagcttt |
212 |
Q |
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| T |
16569566 |
tctttgtttccctcatcaattatagatgtttacactatctgcaggaaacacttcacaatcacaatggtagcgaagaatccaaaggtgatgcggaagcttt |
16569467 |
T |
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| Q |
213 |
cgaaaatggaagcagtaaggaaagaacagtccaaaagaatgaaaacctcttcatgaattg |
272 |
Q |
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| T |
16569466 |
agaaaatggaagcagtaaagaaagaacagtccaaaagaatgaaaacctcttcatgaattg |
16569407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 53 - 272
Target Start/End: Complemental strand, 16528127 - 16527908
Alignment:
| Q |
53 |
aactaatttctgtgttttttctcgcttatccgtgctttgtctccactagttatatagtcttctttgtttccctcatcaattatagttgtttacactatct |
152 |
Q |
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| T |
16528127 |
aactaatttctgtgttttttctatcttatccgtgctttgtctccactgttcatataatcgtctctgtttccctcatcaattatagttgtgtacactatct |
16528028 |
T |
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| Q |
153 |
gcaggaaacatttcacaatcacaatggtagcgaagaatccaaaggtgatgcagaagctttcgaaaatggaagcagtaaggaaagaacagtccaaaagaat |
252 |
Q |
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| T |
16528027 |
gcaggaaacacttcacaatcacaatggtaacaaagagtccacagatgacgccgaagctttagaaaatggaagcaacaaagaaaagacagtccgaaagaat |
16527928 |
T |
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| Q |
253 |
gaaaacctcttcatgaattg |
272 |
Q |
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| T |
16527927 |
gaaaacctctttatgaattg |
16527908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 127 - 272
Target Start/End: Complemental strand, 16588250 - 16588106
Alignment:
| Q |
127 |
atcaattatagttgtttacactatctgcaggaaacatttcacaatcacaatggtagcgaagaatccaaaggtgatgcagaagctttcgaaaatggaagca |
226 |
Q |
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| T |
16588250 |
atcaattatagttattaa-actatccgcaggaaacacttcacaatcacaatggtaacgaagagtccaaaggtaatgccgaagctttagaaaatggaagca |
16588152 |
T |
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| Q |
227 |
gtaaggaaagaacagtccaaaagaatgaaaacctcttcatgaattg |
272 |
Q |
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| T |
16588151 |
gcaaagaaaagacagttcaaaagaatgaaaacctctttttgaattg |
16588106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 226
Target Start/End: Complemental strand, 16519603 - 16519529
Alignment:
| Q |
152 |
tgcaggaaacatttcacaatcacaatggtagcgaagaatccaaaggtgatgcagaagctttcgaaaatggaagca |
226 |
Q |
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| T |
16519603 |
tgcaggaaacacttcacaagcacaatggtagcagtgagtccatagatgatgctgaagctatagaaaatggaagca |
16519529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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