View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_127 (Length: 259)
Name: NF9533A_low_127
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_127 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 45099201 - 45099455
Alignment:
| Q |
1 |
gcgatctctggagtagcacctcccttctggtaatcaggtgtatgagtgcttactgcatgtttagccgcttccttaaaaaccaaataatcctcatcaggaa |
100 |
Q |
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| T |
45099201 |
gcgatctctggagtagcacctcccttctggtaatcaggtgtatgagtgcttactgcatgtttagctgcttccttaaaaaccaaataatcctcatcaggaa |
45099300 |
T |
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| Q |
101 |
tccaagttctccaaagggtatcattaaaaggagttattttcatacctcctacattaatcctatgaacagtttccaaaacctgagatggaagatttctata |
200 |
Q |
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| T |
45099301 |
tccaagttctccaaagggtgtcattaaaaggagttattttcatacctcctacattaatcctatgaacagtttccaaaacctgagatgaaagatttctata |
45099400 |
T |
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| Q |
201 |
ctcttccacaccagaaggaccaaccaaccttgttccataatctataacaaaatct |
255 |
Q |
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| T |
45099401 |
ctcttccacaccagaaggaccaaccaaccttgttccataatctataacaaaatct |
45099455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 25 - 179
Target Start/End: Complemental strand, 17348792 - 17348638
Alignment:
| Q |
25 |
ttctggtaatcaggtgtatgagtgcttactgcatgtttagccgcttccttaaaaaccaaataatcctcatcaggaatccaagttctccaaagggtatcat |
124 |
Q |
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| T |
17348792 |
ttctgataatctggtgtgtgagtgctcactacagccttagctgcatccttaaaaaccagaaaatccttatcaggaatccatgttctccaaagggtatcat |
17348693 |
T |
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| Q |
125 |
taaaaggagttattttcatacctcctacattaatcctatgaacagtttccaaaac |
179 |
Q |
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| T |
17348692 |
taaaaggagttaatttttcacctccaacattaatcctatgaatagtttctaaaac |
17348638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 17363945 - 17363885
Alignment:
| Q |
120 |
atcattaaaaggagttattttcatacctcctacattaatcctatgaacagtttccaaaacc |
180 |
Q |
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| T |
17363945 |
atcattaaagggagttattttcaaaccatcaacgttaatcctatgaatagtttctaaaacc |
17363885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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