View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9533A_low_13 (Length: 429)
Name: NF9533A_low_13
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 12287212 - 12287634
Alignment:
| Q |
1 |
atcaaccaaacagcggattagcggatatatccaaggaattgttttgtgctgcaagttatacaaagtcaaagtcatcaacgaaaatgtatattttgctttt |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
12287212 |
atcaaccaaacagcgtattagcggatatatccaaggaattgttttgtgctgcaagttatacaaagtcaaagtcatcaacgaaaacgtatattt-gctttt |
12287310 |
T |
|
| Q |
101 |
tcaaaccaaatttcaaatacactgaaactacaaaccaattacactctttctttctttccctctttctcctcactttccaaatcaaaatctctaaacttaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
12287311 |
tcaaaccaaatttcaaatacactgaaactacacaccaattacactct--ctttctttccctctttctcgtcactttccaaatcaaaatctctaaacttaa |
12287408 |
T |
|
| Q |
201 |
gcttattatatattcacacaacttattacataacacctcaattccatcaaaacaagattgaagaacatagcaatatacattcattcttaaagtactaaca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
12287409 |
gcttattatatattcacacaacttattacataacacctcaattccatcaaaacaagattgaagaacatagcaatatacaatcattcttaaagtactaaca |
12287508 |
T |
|
| Q |
301 |
cacatttgtgcacaacactattaaattctatacgatgggtgtagcctcacatacattagaaataacggttatatccggggaaaatattcatgtaactgag |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12287509 |
cacatttgtgcacaacactattaaattctatacgatgggtgtagcctcacatacattagaaataacggttatatccggggaaaatattcatgtaattgag |
12287608 |
T |
|
| Q |
401 |
gatgcatatgttgttgttcgaggtga |
426 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
12287609 |
gatgcatatgttgttgttcgaggtga |
12287634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 49 - 426
Target Start/End: Original strand, 12266675 - 12267055
Alignment:
| Q |
49 |
ctgcaagttatacaaagtcaaagtcatcaacgaaaatgtatattttgctttttcaaaccaaatttcaaatacactgaaactacaaaccaattacactctt |
148 |
Q |
| |
|
|||||| | |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| | |
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|
| T |
12266675 |
ctgcaactaatacaaagtcaaagtcttcaacgaaaacgtatattttgctttttcaaaccaaatttcaattacattgaaaccacaaaccaattacactcgt |
12266774 |
T |
|
| Q |
149 |
tctttctttccctctttctcctcactttccaaatcaaaatctctaaacttaagcttattatatattcacacaacttattacataacacctcaattccatc |
248 |
Q |
| |
|
||||| |||||||||||| |||||||||| ||||||||| | || ||||||||||||||||||| ||||||||||| ||||||||||||||||| || |
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|
| T |
12266775 |
a-tttctctccctctttctcatcactttccatatcaaaatcccaaaccttaagcttattatatatttacacaacttataacataacacctcaattcactc |
12266873 |
T |
|
| Q |
249 |
aaaacaagattgaagaacatagcaatatacattcattcttaaagta-ctaaca--cacatttgtgcacaac-actattaaattctatacgatgggtgtag |
344 |
Q |
| |
|
| || || |||||| ||||| |||||| |||||||||||| | | |||||| | ||| | |||||| | |||||||||| ||| |||||||||| |
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|
| T |
12266874 |
acaataaacttgaaggacataacaatatccattcattcttacaccagctaacaggaagttttattcacaactaacattaaattctctactatgggtgtag |
12266973 |
T |
|
| Q |
345 |
cctcacatacattagaaataacggttatatccggggaaaatattcatgtaactgaggatgcatatgttgttgttcgaggtga |
426 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||| ||||||||||||||||| || |||||||| ||||| ||||||||||| |
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|
| T |
12266974 |
cctcacgcacattagaaatcacggttatatccggcgaaaatattcatgtaaccgaagatgcatacgttgtcgttcgaggtga |
12267055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 49 - 426
Target Start/End: Original strand, 12282401 - 12282781
Alignment:
| Q |
49 |
ctgcaagttatacaaagtcaaagtcatcaacgaaaatgtatattttgctttttcaaaccaaatttcaaatacactgaaactacaaaccaattacactctt |
148 |
Q |
| |
|
|||||| | |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| | |
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|
| T |
12282401 |
ctgcaactaatacaaagtcaaagtcttcaacgaaaacgtatattttgctttttcaaaccaaatttcaattacattgaaaccacaaaccaattacactcgt |
12282500 |
T |
|
| Q |
149 |
tctttctttccctctttctcctcactttccaaatcaaaatctctaaacttaagcttattatatattcacacaacttattacataacacctcaattccatc |
248 |
Q |
| |
|
||||| |||||||||||| |||||||||| ||||||||| | || ||||| ||||||||||||||||||||||||| ||||||||||||||||| || |
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|
| T |
12282501 |
a-tttctctccctctttctcatcactttccatatcaaaatcccaaaccttaaccttattatatattcacacaacttataacataacacctcaattcactc |
12282599 |
T |
|
| Q |
249 |
aaaacaagattgaagaacatagcaatatacattcattcttaaagta-ctaaca--cacatttgtgcacaac-actattaaattctatacgatgggtgtag |
344 |
Q |
| |
|
| || || |||||| ||||| |||||| |||||||||||| | | |||||| | ||| | |||||| | |||||||||| ||| |||||||||| |
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|
| T |
12282600 |
acaataaacttgaaggacataacaatatccattcattcttacaccagctaacaggaagttttattcacaactaacattaaattctctactatgggtgtag |
12282699 |
T |
|
| Q |
345 |
cctcacatacattagaaataacggttatatccggggaaaatattcatgtaactgaggatgcatatgttgttgttcgaggtga |
426 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||| ||||||||||||||||| || |||||||| ||||| ||||||||||| |
|
|
| T |
12282700 |
cctcacgcacattagaaatcacggttatatccggcgaaaatattcatgtaaccgaagatgcatacgttgtcgttcgaggtga |
12282781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 347 - 426
Target Start/End: Original strand, 12256885 - 12256964
Alignment:
| Q |
347 |
tcacatacattagaaataacggttatatccggggaaaatattcatgtaactgaggatgcatatgttgttgttcgaggtga |
426 |
Q |
| |
|
||||| ||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||||| |
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|
| T |
12256885 |
tcacaaacattagaaattacggttatatctggtgaaaatattcatgtaacggaggatgcatacgttgttgttcgaggtga |
12256964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 347 - 426
Target Start/End: Original strand, 12264277 - 12264356
Alignment:
| Q |
347 |
tcacatacattagaaataacggttatatccggggaaaatattcatgtaactgaggatgcatatgttgttgttcgaggtga |
426 |
Q |
| |
|
||||| ||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||||| |
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|
| T |
12264277 |
tcacaaacattagaaattacggttatatctggtgaaaatattcatgtaacggaggatgcatacgttgttgttcgaggtga |
12264356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 347 - 426
Target Start/End: Original strand, 12270889 - 12270968
Alignment:
| Q |
347 |
tcacatacattagaaataacggttatatccggggaaaatattcatgtaactgaggatgcatatgttgttgttcgaggtga |
426 |
Q |
| |
|
||||| ||||||||||| ||| ||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
12270889 |
tcacaaacattagaaattacgattatatctggagaaaatattcatgtaacagaggatgcatacgttgttgttcgaggtga |
12270968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 12270659 - 12270734
Alignment:
| Q |
93 |
ttgctttttcaaaccaaatttcaaatacactgaaactacaaaccaattacactctttctttctttccctctttctc |
168 |
Q |
| |
|
|||||||| |||| || | |||||||||| |||| | || |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
12270659 |
ttgcttttccaaatcataattcaaatacattgaaccaaccaaccaattacactctttctttcttcccctctttctc |
12270734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 12256650 - 12256725
Alignment:
| Q |
93 |
ttgctttttcaaaccaaatttcaaatacactgaaactacaaaccaattacactctttctttctttccctctttctc |
168 |
Q |
| |
|
||||||||||||| |||| | |||||||| |||| | || |||||||||||| ||||||||||| |||| |||||| |
|
|
| T |
12256650 |
ttgctttttcaaatcaaaatccaaatacattgaaccaaccaaccaattacaccctttctttcttcccctttttctc |
12256725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 12264042 - 12264117
Alignment:
| Q |
93 |
ttgctttttcaaaccaaatttcaaatacactgaaactacaaaccaattacactctttctttctttccctctttctc |
168 |
Q |
| |
|
||||||||||||| |||| | |||||||| |||| | || |||||||||||| ||||||||||| |||| |||||| |
|
|
| T |
12264042 |
ttgctttttcaaatcaaaatccaaatacattgaaccaaccaaccaattacaccctttctttcttcccctttttctc |
12264117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 115 - 216
Target Start/End: Original strand, 29197446 - 29197546
Alignment:
| Q |
115 |
aaatacactgaaactacaaaccaattacactctttctttctttccctctttctcctcactttccaaatcaaaatctctaaacttaagcttattatatatt |
214 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| | | ||||||||||||| |||||||| |
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|
| T |
29197446 |
aaatacaccgaaacaacaaaccaattacactctttctttctttccctctttctcaccactttccatatcaaaa-cccaaaacttaagcttaatatatatt |
29197544 |
T |
|
| Q |
215 |
ca |
216 |
Q |
| |
|
|| |
|
|
| T |
29197545 |
ca |
29197546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 272 - 426
Target Start/End: Original strand, 29197535 - 29197690
Alignment:
| Q |
272 |
aatatacattcattctt-aaagtactaacacacatttgtgcacaacactattaaattctatacgatgggtgtagcctcacatacattagaaataacggtt |
370 |
Q |
| |
|
|||||| |||||||||| ||||||| ||||| |||||||||||| || ||||| | ||| |||||| |||| |||| |||||||||||||| ||| |
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|
| T |
29197535 |
aatatatattcattctttaaagtacacacacattcttgtgcacaacaacatcaaattttctactatgggtatagcttcacgcacattagaaataacagtt |
29197634 |
T |
|
| Q |
371 |
atatccggggaaaatattcatgtaactgaggatgcatatgttgttgttcgaggtga |
426 |
Q |
| |
|
||| |||| |||||||||||| |||||||||||||||| ||||| ||||||||||| |
|
|
| T |
29197635 |
ataaccggtgaaaatattcatataactgaggatgcatacgttgtcgttcgaggtga |
29197690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 29197352 - 29197413
Alignment:
| Q |
1 |
atcaaccaaacagcggattagcggatatatccaaggaattgttttgtgctgcaagttataca |
62 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||| ||||| |
|
|
| T |
29197352 |
atcaaccaaacagcgtattagcggatatatccacggaattgtcttgtgctgcaagtaataca |
29197413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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