View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_133 (Length: 252)
Name: NF9533A_low_133
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_133 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 12843586 - 12843354
Alignment:
| Q |
1 |
gtgctattagtatctgaattcgcgttcaagcttggagtgaccgttaagattgattttacattgtaaatttcaatcaagattcaagattatagtgttaatg |
100 |
Q |
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| T |
12843586 |
gtgcttttagtatcggaattcgcgttcaagcttggaggtaccgttaagattgattttacattgtaaatttcaatcaagattcaagattatagtgttaatg |
12843487 |
T |
|
| Q |
101 |
tctactgttaagatcgattaatcattcttatgttcttaactcattttagagattatagtgttaatttcacctatagaggtagaaatagaatcatatagtg |
200 |
Q |
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| T |
12843486 |
tctactgttaagatcgattaatcattcttatgttcttaactcattttagagattatagtgttaatttcacctatagaggtagaaatagaatcatatagtg |
12843387 |
T |
|
| Q |
201 |
tttgatattagtcttgttgagtattgcacttat |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
12843386 |
tttgatattagtcttgttgagtattgcacttat |
12843354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 27 - 163
Target Start/End: Original strand, 12861921 - 12862057
Alignment:
| Q |
27 |
caagcttggagtgaccgttaagattgattttacattgtaaatttcaatcaagattcaagattatagtgttaatgtctactgttaagatcgattaatcatt |
126 |
Q |
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| T |
12861921 |
caagcttggaggtacccttaagatcgattttactttctaaatttcaatcaagattcaagattatagtgttaatgtctactgttaagatcgattaatcact |
12862020 |
T |
|
| Q |
127 |
cttatgttcttaactcattttagagattatagtgtta |
163 |
Q |
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| T |
12862021 |
cttatgttcgtaactcattttagagattatagtgtta |
12862057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 88 - 162
Target Start/End: Complemental strand, 13125837 - 13125763
Alignment:
| Q |
88 |
tatagtgttaatgtctactgttaagatcgattaatcattcttatgttcttaactcattttagagattatagtgtt |
162 |
Q |
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| T |
13125837 |
tatagtgttaatgtgtactgttaagatcgattaatcactcttatgttcctaactcattttagagattatagtgtt |
13125763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 13125629 - 13125589
Alignment:
| Q |
66 |
aatttcaatcaagattcaagattatagtgttaatgtctact |
106 |
Q |
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| T |
13125629 |
aatttctatcaagattcaagatcatagtgttaatgtctact |
13125589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 13125587 - 13125540
Alignment:
| Q |
186 |
tagaatcatatagtgtttgatattagtcttgttgagtattgcacttat |
233 |
Q |
| |
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|||||| ||| |||||||||| ||||| |||||||||||||||||||| |
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| T |
13125587 |
tagaataatacagtgtttgattttagtgttgttgagtattgcacttat |
13125540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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