View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_143 (Length: 250)
Name: NF9533A_low_143
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_143 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 35742833 - 35742599
Alignment:
| Q |
1 |
tgaagagtacgaggatctcgaagagctcgaagatccagtaacttataaaattatcacggatgttctcatgcagcaccaagggccgatagataagtttggt |
100 |
Q |
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| T |
35742833 |
tgaagagtacgaggatctcgaagatctcgaagatccagtaacttatagaattatcacggatgttctcatgcagcaccaagggccgatagataagtttggt |
35742734 |
T |
|
| Q |
101 |
cttttcatatctaatgactacaaatttgagatcacaattgaacacctcgataagtggattccgatttggtcagagaggaatattaaacatctcgagcttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35742733 |
cttttcatatctaatgactacaaatttgagatcacaattgaacacctcgataagtggattccgattttgtcagagaggaatattaaacatctcgagcttg |
35742634 |
T |
|
| Q |
201 |
tgaaccacgaaacacatcccgatcaaatgctatat |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
35742633 |
tgaaccacgaaacacatcccgatcaaatgctatat |
35742599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 46 - 235
Target Start/End: Complemental strand, 35749153 - 35748964
Alignment:
| Q |
46 |
taaaattatcacggatgttctcatgcagcaccaagggccgatagataagtttggtcttttcatatctaatgactacaaatttgagatcacaattgaacac |
145 |
Q |
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|||||| ||||| |||||||| ||||| ||| | || |||||| |||||||| |||||||||| || |||||||||| || |||||| ||||||| | |
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| T |
35749153 |
taaaatcatcacagatgttcttatgcaacacaacggtccgatacataagtttcatcttttcataccttatgactacaatttcaagatcataattgaattc |
35749054 |
T |
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| Q |
146 |
ctcgataagtggattccgatttggtcagagaggaatattaaacatctcgagcttgtgaaccacgaaacacatcccgatcaaatgctatat |
235 |
Q |
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||| || |||||||||| | | ||| |||| |||||||||||||||||||| ||||| ||| ||||||| ||||||||||| |||| |
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| T |
35749053 |
ctcagtacgtggattccgttcttgtctaggagggatattaaacatctcgagcttttgaactacggaacacatgtcgatcaaatgccatat |
35748964 |
T |
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