View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_146 (Length: 250)
Name: NF9533A_low_146
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_146 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 32724709 - 32724922
Alignment:
| Q |
11 |
gacagagaagaaacatgagaagacaagaatgatacagagatgatgggtttacatgtttattagagaaagagtaatttttgttttgtatcaatggtgacac |
110 |
Q |
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| T |
32724709 |
gacaaagaagaaacatgagaagacaagaatgatagagagattatgggtttacatgtttattagagaaagagtaatttttgttttgtatcaatggtgacat |
32724808 |
T |
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| Q |
111 |
aagttatttgggttaacgggctttttagaaaggggttgaaggtagtggatgttaaaagattctttctcagcatttcacggttcagagaaaaaagtatggt |
210 |
Q |
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| T |
32724809 |
aagttatttgggttaacaggctttttagaaaggtgttgaaggtaatggatgttaaaagattctttctcagcatttcatggttcagagaaaaaagtatggt |
32724908 |
T |
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| Q |
211 |
tcttatgtctagac |
224 |
Q |
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||||||||| |||| |
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| T |
32724909 |
tcttatgtcaagac |
32724922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 208
Target Start/End: Original strand, 32723264 - 32723453
Alignment:
| Q |
21 |
aaacatgagaagacaagaatgatacagagatgatgggtttacatgtttattagagaaagagtaatttttgttttgtatcaatggtgacacaagttatttg |
120 |
Q |
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||||||||||||||| ||| |||| |||||||||||||||||| ||||| |||||||| ||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
32723264 |
aaacatgagaagacaggaaagatagagagatgatgggtttacaggtttagtagagaaacagtaatttttgttttatattaatggtgacacaagttatttg |
32723363 |
T |
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| Q |
121 |
ggt--taacgggctttttagaaaggggttgaaggtagtggatgttaaaagattctttctcagcatttcacggttcagagaaaaaagtatg |
208 |
Q |
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| T |
32723364 |
agttataacatgtttttgagaaaggtgttgaaggtagtggatgttacaagattctttatcagcatttcatggttcagatgaaaaagtatg |
32723453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 85 - 224
Target Start/End: Original strand, 4001942 - 4002081
Alignment:
| Q |
85 |
tttttgttttgtatcaatggtgacacaagttatttgggttaacgggctttttagaaaggggttgaaggtagtggatgttaaaagattctttctcagcatt |
184 |
Q |
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||||| |||| |||||||||| || |||||||||||||||||| | |||| |||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
4001942 |
ttttttttttttatcaatggtaacgcaagttatttgggttaacatgtttttgagaaagatgttgaaggtagtggatgttaaaagattctttctcataatt |
4002041 |
T |
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| Q |
185 |
tcacggttcagagaaaaaagtatggttcttatgtctagac |
224 |
Q |
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||| |||| |||||||||||||||||||||||| |||||| |
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| T |
4002042 |
tcatggtttagagaaaaaagtatggttcttatgcctagac |
4002081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 11 - 208
Target Start/End: Original strand, 15719979 - 15720179
Alignment:
| Q |
11 |
gacagagaagaaacatgagaagacaagaatgatacagagatgatgggtttacatgtttattagagaaagagtaa-tttttgttttgtatcaatggtgaca |
109 |
Q |
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|||| |||| ||||||||||||||||||| |||| ||||||||||||| |||| ||||| |||||||||||||| |||||||||||||| |||||||||| |
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| T |
15719979 |
gacatagaacaaacatgagaagacaagaaagatagagagatgatgggtgtacaggtttagtagagaaagagtaattttttgttttgtattaatggtgaca |
15720078 |
T |
|
| Q |
110 |
caagttatttgggt--taacgggctttttagaaaggggttgaaggtagtggatgttaaaagattctttctcagcatttcacggttcagagaaaaaagtat |
207 |
Q |
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|||||||||||||| |||| | |||| ||||||| |||||||||||||||||||| ||||||||||||||| |||||| |||||||| ||||||||| |
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| T |
15720079 |
caagttatttgggttataacaagtttttgagaaaggtgttgaaggtagtggatgttacaagattctttctcagtatttcatggttcagatgaaaaagtat |
15720178 |
T |
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| Q |
208 |
g |
208 |
Q |
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| |
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|
| T |
15720179 |
g |
15720179 |
T |
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