View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_149 (Length: 248)
Name: NF9533A_low_149
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_149 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 41311256 - 41311027
Alignment:
| Q |
1 |
ttcttgaatgggtctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactg |
100 |
Q |
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||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311256 |
ttcttgaatggttctattcattggctggtttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactg |
41311157 |
T |
|
| Q |
101 |
ctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311156 |
ctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacact |
41311057 |
T |
|
| Q |
201 |
taagatatgggtgatgcaagaatacacaat |
230 |
Q |
| |
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||||||||||||||||||||||||| |||| |
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| T |
41311056 |
taagatatgggtgatgcaagaatacgcaat |
41311027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 43164934 - 43164710
Alignment:
| Q |
1 |
ttcttgaatgggtctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactg |
100 |
Q |
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||||||||||| ||||||||||||||| ||||| || || |||||||||| |||||||||||||||| |||||||||||||| |||| ||||||||| || |
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| T |
43164934 |
ttcttgaatggttctattcattggctggtttataattatgagactgaaatagatgttattattgcctatgatttaaaggaaaagacaatgtcagagattg |
43164835 |
T |
|
| Q |
101 |
ctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacact |
200 |
Q |
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|||| ||||||| |||||||||||||| ||| | | ||||||||||| ||||| || || ||||||| || |||||||||||||||||| ||||||| |
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| T |
43164834 |
ctcttccagatgatttttatagtgatttttctcccaacctttatgatttgttggtacttcgcggacttatcagcgtatggaatatggagatgtctacact |
43164735 |
T |
|
| Q |
201 |
taagatatgggtgatgcaagaatac |
225 |
Q |
| |
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|||||||||||| |||||||||||| |
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| T |
43164734 |
taagatatgggtaatgcaagaatac |
43164710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 30165671 - 30165883
Alignment:
| Q |
1 |
ttcttgaatgggtctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactg |
100 |
Q |
| |
|
||||| ||||| ||||||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||||||||| |||| || |||||| | |
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| T |
30165671 |
ttcttcaatggttctattcattggctggtttataattatcagactgaaatggatgttattattgcctttgatttaaaggaagcgacaatggcagagatag |
30165770 |
T |
|
| Q |
101 |
ctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacact |
200 |
Q |
| |
|
|||| ||| ||| || || | ||| |||||||||||||| |||||||| ||||||| |||||||||||| |||||| | ||||| | |
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| T |
30165771 |
ctcttccaaatgattgttctcgtg------------gaatttatgatttgttggtatttcatggacttatcagtgtatggaatgtggagaggtctacagt |
30165858 |
T |
|
| Q |
201 |
taagatatgggtgatgcaagaatac |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
30165859 |
taagatatgggtgatgcaagaatac |
30165883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 30125210 - 30124981
Alignment:
| Q |
1 |
ttcttgaatgggtctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactg |
100 |
Q |
| |
|
|||||||||||| |||||||||||||| || || || || |||| | | |||||||||| |||||||||||||||||||| |||| ||||||| | | |
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| T |
30125210 |
ttcttgaatgggactattcattggctggttcataatcatgagaccaacaaggatgttattgttgcctttgatttaaaggaagcgacaatgtcagaaatag |
30125111 |
T |
|
| Q |
101 |
ctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacact |
200 |
Q |
| |
|
|||| ||| ||| |||||||| ||||||||| || | |||||||||| | |||||||| ||||||| ||| |||||| | | |||||| | || | |
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| T |
30125110 |
ctcttccaaatgatttttataccgattactctcctgtagattatgatttgttagtatttggtggacttatcagtttatggattcttgagatggatgcagt |
30125011 |
T |
|
| Q |
201 |
taagatatgggtgatgcaagaatacacaat |
230 |
Q |
| |
|
||||||| |||||||||| |||||| |||| |
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|
| T |
30125010 |
taagatacgggtgatgcatgaatacgcaat |
30124981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 28181079 - 28180965
Alignment:
| Q |
13 |
tctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatg |
112 |
Q |
| |
|
||||||||||||||| ||||| || || |||| |||| | |||||||||||||||||||||||||||||||||| ||||||| | ||||| ||||||| |
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| T |
28181079 |
tctattcattggctggtttataattatgagaccaaaattggtgttattattgcctttgatttaaaggaaatgacaatgtcagatatagctcttccagatg |
28180980 |
T |
|
| Q |
113 |
gtttttatagtgatt |
127 |
Q |
| |
|
||||||||| |||| |
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|
| T |
28180979 |
atttttatagggatt |
28180965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 30131164 - 30131068
Alignment:
| Q |
1 |
ttcttgaatgggtctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagaga |
97 |
Q |
| |
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|||||||||||| |||||||||||||| ||||| || || |||| || |||||||||||| |||||| ||||||||||||||||| ||||||||| |
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| T |
30131164 |
ttcttgaatggggctattcattggctggtttataattatgagacaagaagggatgttattatagcctttaatttaaaggaaatgacaatgtcagaga |
30131068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 30120164 - 30120068
Alignment:
| Q |
1 |
ttcttgaatgggtctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagaga |
97 |
Q |
| |
|
|||||||||||| ||||||||||| || || || || || |||| | ||| |||||||||||||||||||||||||||||| |||| | ||||||| |
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|
| T |
30120164 |
ttcttgaatggggctattcattgggtggttcataatcatgagaccaacatgaatgttattattgcctttgatttaaaggaaacgacaatatcagaga |
30120068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 30130967 - 30130934
Alignment:
| Q |
195 |
tacacttaagatatgggtgatgcaagaatacaca |
228 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
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|
| T |
30130967 |
tacagttaagatatgggtgatgcaagaatacaca |
30130934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 21426642 - 21426703
Alignment:
| Q |
51 |
ggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatg |
112 |
Q |
| |
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|||||||||||||||| ||||||||||||||| ||| ||||||||| ||||| ||||||| |
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|
| T |
21426642 |
ggatgttattattgcccttgatttaaaggaaacaacaatgtcagagatagctcttccagatg |
21426703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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