View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_155 (Length: 246)
Name: NF9533A_low_155
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_155 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 14 - 240
Target Start/End: Original strand, 48693630 - 48693856
Alignment:
| Q |
14 |
agacatattgaaatttggactagtacttcttgaaaagaattgatatcacaaagttgtgtagtatagaatagaagatattatggaaaaagagtgtgttgag |
113 |
Q |
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| T |
48693630 |
agacatattgaaatttggactagtacttcttgaaaagaattgatatcacaaagttgtgtagtatagaatagaagatattatggaaaaagagtgtgttgag |
48693729 |
T |
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| Q |
114 |
gatattatggaaattgaagtccttccttcaatgtggccagaagatattggagctgatgttggaaagcagttcaatatagaaaagccaggaaatgatcaag |
213 |
Q |
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| T |
48693730 |
gatattatggaaattgaagtccttccttcaatgtggccagaagatattggagctgatgttggaaagcagttcaatatagaaaagccaggaaatgatcaag |
48693829 |
T |
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| Q |
214 |
atatgttagaagaagtatcaatcatag |
240 |
Q |
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| T |
48693830 |
atgtgttagaagaagtatcaatcatag |
48693856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 236
Target Start/End: Complemental strand, 3457064 - 3456967
Alignment:
| Q |
139 |
cttcaatgtggccagaagatattggagctgatgttggaaagcagttcaatatagaaaagccaggaaatgatcaagatatgttagaagaagtatcaatc |
236 |
Q |
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| T |
3457064 |
cttcaatgtggccagaagatgttggaactgatgttggaaaacaattcaacatagaaaaaccaggaagagatcaagatatgttggaagaagtaacaatc |
3456967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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