View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_160 (Length: 244)
Name: NF9533A_low_160
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_160 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 59 - 224
Target Start/End: Original strand, 49124225 - 49124390
Alignment:
| Q |
59 |
attcataataaactttgttaaggggacaaaacttttaagatgcagaatgaaaacaatctataacttctccaatcggaattgttcattaatttgttaacag |
158 |
Q |
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| T |
49124225 |
attcataataaactttgttaaggggacaaaacttttaagatgcagaatgaaaacgatctataacttctccaatcggaattgttcattaatttgttaacag |
49124324 |
T |
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| Q |
159 |
ttgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccataactacattccaag |
224 |
Q |
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| T |
49124325 |
ttgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccttaactacattccaag |
49124390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 49124125 - 49124171
Alignment:
| Q |
20 |
gaatgtaaatatgttaagtgtgttaacatagattttaatattcataa |
66 |
Q |
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| T |
49124125 |
gaatgtaaatatgttaagtgtgttaacatagattttaatattcataa |
49124171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 11683218 - 11683266
Alignment:
| Q |
160 |
tgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagcc |
208 |
Q |
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| T |
11683218 |
tgtaattttgaattttgtatactaggttaaagttgtgattgaaatagcc |
11683266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 219
Target Start/End: Original strand, 18988416 - 18988475
Alignment:
| Q |
160 |
tgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccataactacatt |
219 |
Q |
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| T |
18988416 |
tgtaattttgaactttgcaaacttggttaaagttgtaattgaaatagccttaactacatt |
18988475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 30341349 - 30341290
Alignment:
| Q |
160 |
tgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccataactacatt |
219 |
Q |
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| T |
30341349 |
tgtaattttgaactttgtaaacttggttaaagttgtaattgaaatagccttaactacatt |
30341290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 23917108 - 23917049
Alignment:
| Q |
160 |
tgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccataactacatt |
219 |
Q |
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| T |
23917108 |
tgtaattttgaactttgcaaacttggttaaagttgtaattgaaatagccttaactacatt |
23917049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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