View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_168 (Length: 242)
Name: NF9533A_low_168
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_168 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 38643425 - 38643184
Alignment:
| Q |
1 |
gagaatagaagaaaccatgatgagtttcttctatgttccattattcttggggtgagttgagtgaaatgtgaataatggcaactagcagaggcaaactaac |
100 |
Q |
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| T |
38643425 |
gagaatagaagaaaccatgatgagtttcttctatgttccattattcttggggtgagttgagtgaaatgtgaataatggcaactagcagaggcaaactaac |
38643326 |
T |
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| Q |
101 |
aactaagtactagcttttatgacaggctcagtggatgagaatgtaggattcatatgctgccagctatggtaacatgtgatttatatttaagaagccttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38643325 |
aactaagtactagcttttatgacaggctcagtggatgagaatgtaggattcatatgctgccagctatggtaacatgtgatttatatttaagaagccttgt |
38643226 |
T |
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| Q |
201 |
gtttctgttgaattactaaaatactactactcactatttcat |
242 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38643225 |
gtttttgttgaattactaaaatactactactcactatttcat |
38643184 |
T |
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