View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_175 (Length: 240)
Name: NF9533A_low_175
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_175 |
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| [»] chr3 (6 HSPs) |
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| [»] scaffold0060 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 6 - 240
Target Start/End: Complemental strand, 53514053 - 53513819
Alignment:
| Q |
6 |
gagatggacatcatgttattcactatggagtcgagcaaaaatgtgagcctcattacgattacacccctgatggggtcgtcactaagaatggaggcccacg |
105 |
Q |
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| T |
53514053 |
gagaaggacttcatgttattcactatggagtcgggcaaaaatgtgagcctcattacgattacacctctgatggggtcgtcactaagaatggaggcccacg |
53513954 |
T |
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| Q |
106 |
agttgctacagttcttatgtatctgtaaagccttattctctttccatatattggttttgcattgtgctttacgatggaattgtctacaaatttgaccatt |
205 |
Q |
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| T |
53513953 |
agttgctacagttcttatgtatctgtaaagccttattctctttccatatattggttttgcattgtgctttatgatggaattgtatacaaatttgacagtt |
53513854 |
T |
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| Q |
206 |
ccttgcttttggtccttatgaaggtctgacgttga |
240 |
Q |
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| T |
53513853 |
ccttgtttttggtccttatgtaggtctgacgttga |
53513819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 67 - 240
Target Start/End: Complemental strand, 53510383 - 53510210
Alignment:
| Q |
67 |
cacccctgatggggtcgtcactaagaatggaggcccacgagttgctacagttcttatgtatctgtaaagccttattctctttccatatattggttttgca |
166 |
Q |
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| T |
53510383 |
caccgctggtggggtcgtcactaagaatggaggcccgcgagttgctacagttcttatgtatctgtaaagccttattctctttcgatatattggttttgcg |
53510284 |
T |
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| Q |
167 |
ttgtgctttacgatggaattgtctacaaatttgaccattccttgcttttggtccttatgaaggtctgacgttga |
240 |
Q |
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| T |
53510283 |
ttgtgctttacgatggaattgtatacaaatttgacagttccttgtttttggtccttatgaaggtccgacgttga |
53510210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 53524338 - 53524119
Alignment:
| Q |
21 |
ttattcactatggagtcgagcaaaaatgtgagcctcattacgattacacccctgatggggtcgtcactaagaatggaggcccacgagttgctacagttct |
120 |
Q |
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|||||||||||| ||||| ||| |||| |||||||||||||||||||| | | || || |||| || |||||||| ||||||||||||||||| || |
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| T |
53524338 |
ttattcactatgaagtcgggcagaaatttgagcctcattacgattacaactttaattggagaatcaccaacaatggaggtccacgagttgctacagtcct |
53524239 |
T |
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| Q |
121 |
tatgtatctgtaaagccttattctctttccatatattggttttgcattgtgctttacgatggaattgtctacaaatttgaccattccttgcttttggtcc |
220 |
Q |
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| T |
53524238 |
tatgtatctgtaaacccttattctctttccatatattggttttatattatgctttatgatggaattgtatacaaatttgacagttctttgtttttggtac |
53524139 |
T |
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| Q |
221 |
ttatgaaggtctgacgttga |
240 |
Q |
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| T |
53524138 |
ttatgaaggtctgacgttga |
53524119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 6 - 201
Target Start/End: Complemental strand, 53547982 - 53547787
Alignment:
| Q |
6 |
gagatggacatcatgttattcactatggagtcgagcaaaaatgtgagcctcattacgattacacccctgatggggtcgtcactaagaatggaggcccacg |
105 |
Q |
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|||| |||| ||| ||| ||||||||||||| | | |||||| |||||||||||| |||||| || ||||| | || ||||||||||||||||| ||| |
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| T |
53547982 |
gagagggacttcaggttcttcactatggagttggggaaaaatatgagcctcattatgattacttccttgatgagttcaacactaagaatggaggccaacg |
53547883 |
T |
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| Q |
106 |
agttgctacagttcttatgtatctgtaaagccttattctctttccatatattggttttgcattgtgctttacgatggaattgtctacaaatttgac |
201 |
Q |
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| T |
53547882 |
agttgcaacagttcttatgtatctgtaaacccttattctctttccataaattggtttggcagtgtgctttgtgatggaattgtataccaacttgac |
53547787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 146
Target Start/End: Complemental strand, 20196853 - 20196798
Alignment:
| Q |
91 |
gaatggaggcccacgagttgctacagttcttatgtatctgtaaagccttattctct |
146 |
Q |
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| T |
20196853 |
gaatggaggcccgcgagttgctacatttcttatgtatttgtaaacccttattctct |
20196798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 20196935 - 20196876
Alignment:
| Q |
6 |
gagatggacatcatgttattcactatggagtcgagcaaaaatgtgagcctcattacgatt |
65 |
Q |
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| T |
20196935 |
gagagggacttcaggttattcactatggagtcgggcagaaatttgtgcctcattacgatt |
20196876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 175
Target Start/End: Original strand, 65011 - 65066
Alignment:
| Q |
120 |
ttatgtatctgtaaagccttattctctttccatatattggttttgcattgtgcttt |
175 |
Q |
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| T |
65011 |
ttatgtatctgtaaattcttcttgtctttccatatattgtttttgcagtgtgcttt |
65066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 240
Target Start/End: Original strand, 16608804 - 16608893
Alignment:
| Q |
151 |
atatattggttttgcattgtgctttacgatggaattgtctacaaatttgaccattccttgcttttggtccttatgaaggtctgacgttga |
240 |
Q |
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| T |
16608804 |
atataatggttttgcattatgctttgtgatggagttttatacaaattcgacaactcccggtttttggtcccgatgaaggtctgacgttga |
16608893 |
T |
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