View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_182 (Length: 238)
Name: NF9533A_low_182
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_182 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 46 - 212
Target Start/End: Original strand, 1558996 - 1559162
Alignment:
| Q |
46 |
tgcatacataaaactatcaaccatttgtcaaataacaaaagccatcaacctcaccaacaacagtttatttacaatataatttatgtccaactcttcatcc |
145 |
Q |
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| T |
1558996 |
tgcatacataaaactatcaaccatttgtcaaataacaaaagccatcaacctcaccaacaacagtttatttacaatataatttatgtccaactcttcatcc |
1559095 |
T |
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| Q |
146 |
accaaagggttatggacccttcattttctggcttctaaatcctctctctattaagtaggtttatcgc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1559096 |
accaaagggttatggacccttcattttctggcttctaaatcctctctctattaagtaggcttatcgc |
1559162 |
T |
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