View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_185 (Length: 238)
Name: NF9533A_low_185
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_185 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 29675149 - 29674938
Alignment:
| Q |
17 |
aatatccaaagtttcaaatttcattcctaccaaacttcgcatttgattcaaaataaagaaaaatttgtcttgtatttccatcatattcatcatcaatact |
116 |
Q |
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| T |
29675149 |
aatattcaaagtttcaaattttattcctagcaaacttcacatttgattcaaaatgaagaaaaatttgtctcgtatttccatcatattcatcatcaatact |
29675050 |
T |
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| Q |
117 |
gaagagggctcattagctcctgagaatggtaggagtcattttcaacataagcatctttttcactacattctcttcaacattaatacatgtgccttgtcct |
216 |
Q |
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||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
29675049 |
gaaaagggcttattagctcctgagaatggtaggagtcattttcaacataagcatcattttaactacattctcttcaacattaatacatgccccttgtcct |
29674950 |
T |
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| Q |
217 |
tccgttgatgtc |
228 |
Q |
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| T |
29674949 |
tccgttgatgtc |
29674938 |
T |
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