View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_189 (Length: 237)
Name: NF9533A_low_189
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_189 |
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| [»] scaffold0128 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 6306688 - 6306851
Alignment:
| Q |
9 |
gagatgaacacatgacataattaacaagaagctaaaccagggtgaaaggatcgatgtgaatatctttggtggcgacgttgtccgtgaaagaaggatttga |
108 |
Q |
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| T |
6306688 |
gagaagaacacatgacataattaataagaagctaaaccagggtgaaaggatcgatgtgaatatctttggtggcgacgccgtcggtgaaagaaggatttga |
6306787 |
T |
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| Q |
109 |
attagctacggattcttcaggtcgagaagtgatactgaatgagtttgcttcggttaagcaatat |
172 |
Q |
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| T |
6306788 |
attagcgacggattcttcaggtcgagaagtgatactgaatgagtttgcttcggttaagaaatat |
6306851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 14 - 166
Target Start/End: Original strand, 20627 - 20779
Alignment:
| Q |
14 |
gaacacatgacataattaacaagaagctaaaccagggtgaaaggatcgatgtgaatatctttggtggcgacgttgtccgtgaaagaaggatttgaattag |
113 |
Q |
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| T |
20627 |
gaacacatgacataattaacaagaagctaaatccaagcgaaaggatcgatgtgaatatctttggtggcgatgctgtcggtgaaagaaggatttgaattag |
20726 |
T |
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| Q |
114 |
ctacggattcttcaggtcgagaagtgatactgaatgagtttgcttcggttaag |
166 |
Q |
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| T |
20727 |
cgacggattcttcgggtggagaagtgataccgaatgagtttgcttcgattaag |
20779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 16 - 172
Target Start/End: Original strand, 39538896 - 39539052
Alignment:
| Q |
16 |
acacatgacataattaacaagaagctaaaccagggtgaaaggatcgatgtgaatatctttggtggcgacgttgtccgtgaaagaaggatttgaattagct |
115 |
Q |
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| T |
39538896 |
acacatgacgtaattaacaagaagctaaacccaggtgaaaggatcgatgtgaatatctttggtggcaacgccgtcggtgaaagaaggatttgaattagcg |
39538995 |
T |
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| Q |
116 |
acggattcttcaggtcgagaagtgatactgaatgagtttgcttcggttaagcaatat |
172 |
Q |
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| T |
39538996 |
acggattcttcgggtggagaagtgataccgaatgagtttgcttcaattaagaaatat |
39539052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 25 - 172
Target Start/End: Original strand, 33809090 - 33809237
Alignment:
| Q |
25 |
ataattaacaagaagctaaaccagggtgaaaggatcgatgtgaatatctttggtggcgacgttgtccgtgaaagaaggatttgaattagctacggattct |
124 |
Q |
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| T |
33809090 |
ataattaacaagaagctaaacccaggtcaaaggatcgatgtgaatatcttttgtggcgacgccgtcggtgaaagaaggatttgaattagcgacgcattca |
33809189 |
T |
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| Q |
125 |
tcaggtcgagaagtgatactgaatgagtttgcttcggttaagcaatat |
172 |
Q |
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| T |
33809190 |
tcgggtcgagaagtgataccgaatgagtttgcttcgattaagaaatat |
33809237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 44257493 - 44257456
Alignment:
| Q |
9 |
gagatgaacacatgacataattaacaagaagctaaacc |
46 |
Q |
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| T |
44257493 |
gagaagaacacatgacataattaataagaagctaaacc |
44257456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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