View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_191 (Length: 236)
Name: NF9533A_low_191
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_191 |
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Alignment Details
Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 31 - 155
Target Start/End: Complemental strand, 41224571 - 41224447
Alignment:
| Q |
31 |
attatgatgatatcaaataaattaactaggtaagcnnnnnnnttaccatcactccatttgagcccaacaacaagaagtgaatcatcgctatttctcctcc |
130 |
Q |
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| T |
41224571 |
attatgatgatatcaaataaattaactaggtaagcaaaaaaattaccatcactccatttgtgcccaacaacaagaagtgaatcgtcgctatttctcctcc |
41224472 |
T |
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| Q |
131 |
tatttgctcaagtttcaaatctcaa |
155 |
Q |
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| T |
41224471 |
tattttctcaagtttcaaatctcaa |
41224447 |
T |
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Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 41224421 - 41224355
Alignment:
| Q |
147 |
aaatctcaatccttaactagtgtttctcctttattatttcaaatttcaaaaccttcccctctatatt |
213 |
Q |
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| T |
41224421 |
aaatctcaatccttaactagtgtttctcctttattatttcaaatttcaaaaccttcccctctatatt |
41224355 |
T |
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