View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9533A_low_198 (Length: 232)
Name: NF9533A_low_198
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_198 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 2 - 220
Target Start/End: Original strand, 24301046 - 24301264
Alignment:
| Q |
2 |
tcaatttagacatatcatattttatttccaaccctacaacctagtaaaatatctttaactttatgctcattcttgttccaattttcatttgggcttcgaa |
101 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||| |
|
|
| T |
24301046 |
tcaacttagacatatcatattttatttccaaccatacaacctagtaaaatatctttaactttatgctcattcttgtaccaattttcacttgggctttgaa |
24301145 |
T |
|
| Q |
102 |
gcccgcagtgtgggttcggatgagcatctgtttagagctattgatgagcttttttcaactcaacgaggaaactcttcttcaacattgatcagagtccact |
201 |
Q |
| |
|
|||||||||||||||| |||| ||| |||||| |||| ||| ||||||||| | || |||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
24301146 |
gcccgcagtgtgggttatgatgcgcacctgtttggagccatttatgagctttcatacgcttaacggagaaacttttcttcaacattgatcagagtccact |
24301245 |
T |
|
| Q |
202 |
ccaacacttccaacatatt |
220 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
24301246 |
ccaacacttccaacatatt |
24301264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University