View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_20 (Length: 416)
Name: NF9533A_low_20
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_20 |
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| [»] scaffold0036 (2 HSPs) |
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| [»] scaffold2116 (1 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 190 - 398
Target Start/End: Complemental strand, 90715 - 90507
Alignment:
| Q |
190 |
tttaaaagatgcacccaatgaaaatattggaagtgttggtgattgttttagcttattagttttaaaaaatgaggtgttaaattgattgtgaccatccaat |
289 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
90715 |
tttaaaagatgcaccccatgaaaatatttgaagtgttggtgattgttttagcttattagttttaaaaaatgaggtgttaaattgattgtgaccatccaat |
90616 |
T |
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| Q |
290 |
ttgatcaactcatgattttgaccattaatttgatgactaatttgacattaacaaacttgatctaaattttattttacaaactcagcaattacacttgaaa |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
90615 |
ttgatcaactcatgattttgaccattaatttgatgactaatttgacattaacaaacttgatctaaattttattttacaaactcagcaattacacttgaaa |
90516 |
T |
|
| Q |
390 |
agcaagatc |
398 |
Q |
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||||||||| |
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| T |
90515 |
agcaagatc |
90507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 15 - 187
Target Start/End: Complemental strand, 90967 - 90795
Alignment:
| Q |
15 |
atgaactcaatcattggatcatttgggtctgtggttcttatgaagcttggaagatctttcaatcgaatttcttttatgcctagcacccaatctattggag |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
90967 |
atgaactcaatcattggatcatttgggtctgtggttcttatgaagcttggaagatctttcaatcgaatttcttttatgcctggcacccaatctattggag |
90868 |
T |
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| Q |
115 |
tctctagatacccatttgtcatgtcactccagtctgcatgtaacacaaaatttacttcataattagttggtga |
187 |
Q |
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| T |
90867 |
tctctagatacccatttgtcatgtcactccagtctgcatgtaacacaaaaattacttcataattagttggtga |
90795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 32 - 174
Target Start/End: Original strand, 26672692 - 26672836
Alignment:
| Q |
32 |
atcatttgggtctgtggttcttatgaagcttggaagatctttcaatcgaatttcttttatgcctagcacccaatctattggagtctctagatacccattt |
131 |
Q |
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|||||| |||| ||||||||| ||||||||||| | ||| || ||||| ||||||||||||||| ||||||||||||| | |||||| | |||||||||| |
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| T |
26672692 |
atcattagggtttgtggttctgatgaagcttgggatatcctttaatcggatttcttttatgcctggcacccaatctatggtagtctccaaatacccattt |
26672791 |
T |
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| Q |
132 |
gtcatgtcactccagtctgcatgt--aacacaaaatttacttcat |
174 |
Q |
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| T |
26672792 |
gttatataactggagtctgcatgtcaaacacataatttacttcat |
26672836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 32 - 174
Target Start/End: Original strand, 26944290 - 26944434
Alignment:
| Q |
32 |
atcatttgggtctgtggttcttatgaagcttggaagatctttcaatcgaatttcttttatgcctagcacccaatctattggagtctctagatacccattt |
131 |
Q |
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|||||| |||| ||||||||| ||||||||||| | ||| || ||||| ||||||||||||||| ||||||||||||| | |||||| | |||||||||| |
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| T |
26944290 |
atcattagggtttgtggttctgatgaagcttgggatatcctttaatcggatttcttttatgcctggcacccaatctatggtagtctccaaatacccattt |
26944389 |
T |
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| Q |
132 |
gtcatgtcactccagtctgcatgt--aacacaaaatttacttcat |
174 |
Q |
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|| || | ||| ||||||||||| |||||| |||||||||||| |
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| T |
26944390 |
gttatataactggagtctgcatgtcaaacacataatttacttcat |
26944434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 133
Target Start/End: Original strand, 26901984 - 26902085
Alignment:
| Q |
32 |
atcatttgggtctgtggttcttatgaagcttggaagatctttcaatcgaatttcttttatgcctagcacccaatctattggagtctctagatacccattt |
131 |
Q |
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||||||||| ||||||||||| ||||| |||| | ||| | | || ||||||||||||||| | |||||||| |||| |||||| | |||||||||| |
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| T |
26901984 |
atcatttggatctgtggttctaatgaaagttgggatgtctcttagtctgatttcttttatgcctggtacccaatcaattgtagtctccaaatacccattt |
26902083 |
T |
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| Q |
132 |
gt |
133 |
Q |
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|| |
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| T |
26902084 |
gt |
26902085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2116 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold2116
Description:
Target: scaffold2116; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 897 - 856
Alignment:
| Q |
32 |
atcatttgggtctgtggttcttatgaagcttggaagatcttt |
73 |
Q |
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||||||| | |||||| ||||||||||||||||||||||||| |
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| T |
897 |
atcatttagatctgtgattcttatgaagcttggaagatcttt |
856 |
T |
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