View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_200 (Length: 231)
Name: NF9533A_low_200
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_200 |
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| [»] scaffold0896 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 5e-89; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 33 - 214
Target Start/End: Complemental strand, 7140536 - 7140355
Alignment:
| Q |
33 |
agtacgaatcgatgtcagaaaagttcaacatcttcggtcttacttcttttcatgtgacactttaacatctcttcacatttgtgttgcttttcctcaacga |
132 |
Q |
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| T |
7140536 |
agtacgaatcgatgtcagaaaagttcaacatcttcagtcttacttcttttcatgtgacactttaacatctcttcacatttgtgttgcttttcgtcaacga |
7140437 |
T |
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| Q |
133 |
acattatttccaaattctttgaattttccagcattaacctacttgtttttagggtcctttgactttggtgtggacgatgatg |
214 |
Q |
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| T |
7140436 |
acattatttcaaaattctttgaattttccagcattaacctacttctttttagggtcctttgactttggtgtggacgatgatg |
7140355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 35 - 214
Target Start/End: Complemental strand, 8656449 - 8656270
Alignment:
| Q |
35 |
tacgaatcgatgtcagaaaagttcaacatcttcggtcttacttcttttcatgtgacactttaacatctcttcacatttgtgttgcttttcctcaacgaac |
134 |
Q |
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| T |
8656449 |
tacgaatcgatgtcaaaaaagttaaacatcttcagtcttacttcttttcatgtgacactttaacatctcttcacatttgtgttgcttttcctcaacgaac |
8656350 |
T |
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| Q |
135 |
attatttccaaattctttgaattttccagcattaacctacttgtttttagggtcctttgactttggtgtggacgatgatg |
214 |
Q |
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| T |
8656349 |
attatttccaaattctttgaaatttccagcattaacctacttatttttagggtcctttgactttggtgtggacgatgatg |
8656270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 68 - 210
Target Start/End: Complemental strand, 8680112 - 8679970
Alignment:
| Q |
68 |
ggtcttacttcttttcatgtgacactttaacatctcttcacatttgtgttgcttttcctcaacgaacattatttccaaattctttgaattttccagcatt |
167 |
Q |
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| T |
8680112 |
ggtcttacttcttttcatgtgacactttaacatcacttcacatttctgttgcttttcctcaacgaacattatttccaaattctttgaattttccatgatt |
8680013 |
T |
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| Q |
168 |
aacctacttgtttttagggtcctttgactttggtgtggacgat |
210 |
Q |
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| T |
8680012 |
aacctacttgtttttagggtcctttgactttggtgtggacgat |
8679970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 89 - 205
Target Start/End: Complemental strand, 7115269 - 7115153
Alignment:
| Q |
89 |
acactttaacatctcttcacatttgtgttgcttttcctcaacgaacattatttccaaattctttgaattttccagcattaacctacttgtttttagggtc |
188 |
Q |
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| T |
7115269 |
acactttaacatctcttcacgtttctgttgcttctcctcaaagaactttatttccaaattctttgaattttccagcattaactagtttgtctttatggtc |
7115170 |
T |
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| Q |
189 |
ctttgactttggtgtgg |
205 |
Q |
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| T |
7115169 |
ctttgactttcgtgtgg |
7115153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 89 - 205
Target Start/End: Complemental strand, 7120341 - 7120225
Alignment:
| Q |
89 |
acactttaacatctcttcacatttgtgttgcttttcctcaacgaacattatttccaaattctttgaattttccagcattaacctacttgtttttagggtc |
188 |
Q |
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|||||||||||||||||||| ||| |||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||| |||| |||| |||| |
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| T |
7120341 |
acactttaacatctcttcacgtttctgttgcttctcctcaaagaactttatttccaaattctttgaattttccagcattaactagtttgtctttatggtc |
7120242 |
T |
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| Q |
189 |
ctttgactttggtgtgg |
205 |
Q |
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| T |
7120241 |
ctttgactttcgtgtgg |
7120225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 89 - 205
Target Start/End: Complemental strand, 7123745 - 7123629
Alignment:
| Q |
89 |
acactttaacatctcttcacatttgtgttgcttttcctcaacgaacattatttccaaattctttgaattttccagcattaacctacttgtttttagggtc |
188 |
Q |
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|||||||||||||||||||| ||| |||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||| |||| |||| |||| |
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| T |
7123745 |
acactttaacatctcttcacgtttctgttgcttctcctcaaagaactttatttccaaattctttgaattttccagcattaactagtttgtctttacggtc |
7123646 |
T |
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| Q |
189 |
ctttgactttggtgtgg |
205 |
Q |
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| T |
7123645 |
ctttgactttcgtgtgg |
7123629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 183
Target Start/End: Complemental strand, 7175144 - 7175036
Alignment:
| Q |
75 |
cttcttttcatgtgacactttaacatctcttcacatttgtgttgcttttcctcaacgaacattatttccaaattctttgaattttccagcattaacctac |
174 |
Q |
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| T |
7175144 |
cttcttttcatgtcacactttaacatctcttaacctttctttttctgattctcaagaaacattatttccaaattctctgaattttccagctttaaccaac |
7175045 |
T |
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| Q |
175 |
ttgttttta |
183 |
Q |
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|||| |||| |
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| T |
7175044 |
ttgtcttta |
7175036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 13492331 - 13492369
Alignment:
| Q |
132 |
aacattatttccaaattctttgaattttccagcattaac |
170 |
Q |
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| T |
13492331 |
aacattatttccaaattctttgaattttccagcattaac |
13492369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0896 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0896
Description:
Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 2595 - 2640
Alignment:
| Q |
89 |
acactttaacatctcttcacatttgtgttgcttttcctcaacgaac |
134 |
Q |
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| T |
2595 |
acactttaacatctcttcacgtttctgttgcttctcctcaaagaac |
2640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 38862945 - 38862905
Alignment:
| Q |
130 |
cgaacattatttccaaattctttgaattttccagcattaac |
170 |
Q |
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| T |
38862945 |
cgaacattatttccaaaatctttgaatttgcccgcattaac |
38862905 |
T |
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