View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9533A_low_21 (Length: 416)
Name: NF9533A_low_21
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 7 - 398
Target Start/End: Complemental strand, 29013767 - 29013376
Alignment:
| Q |
7 |
gaaatatgcataatatcagctcgtggagtaagagcatcacattcactatggaaacgtcaatggtatgctattggttgggttgatccaaccaacaaataca |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29013767 |
gaaatatgcataatatcagctcgtggagtaagagcatcacattcactatggaaacgtcaatggtatgctattggttgggttgatccaaccaacaaataca |
29013668 |
T |
|
| Q |
107 |
taaccaaagttgatgcttcaaccaacacaaaccctctttggagaacaaagttttccattcaagttgataactctgatccaaattttcatgatcttgcatt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29013667 |
taaccaaagttgatgcttcaaccaacacaaaccctctttggagaacaaagttttccattcaagttgataactctgatccaaattttcatgatcttgcatt |
29013568 |
T |
|
| Q |
207 |
gaatgttgaagtttatagcagagaccctgttttctttacagagaaacttcatggatcagctactgttcttctcaaagagtttcttgctaaagggttgctg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29013567 |
gaatgttgaagtttatagcagagacccttttttctttacagagaaacttcatggatcagctactgttcttctcaaagagtttcttgctaaagggttgctg |
29013468 |
T |
|
| Q |
307 |
aatgatgagggtttaaggcaagggagtgaagaagttggaagctatcagttaaggaagaagaaatctggtaaaccaggtggatttgttgatgt |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29013467 |
aatgatgagggtttaaggcaagggagtgaagaagttggaagctatcagttaaggaagaagaaatctggtaaaccaagtggatttgttgatgt |
29013376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 7 - 398
Target Start/End: Complemental strand, 29366455 - 29366064
Alignment:
| Q |
7 |
gaaatatgcataatatcagctcgtggagtaagagcatcacattcactatggaaacgtcaatggtatgctattggttgggttgatccaaccaacaaataca |
106 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29366455 |
gaaatatgcttaatatcagctcgaggagtaagagcatcacattcactatggaaacgtcaatggtatgctattggttgggttgatccaaccaacaaataca |
29366356 |
T |
|
| Q |
107 |
taaccaaagttgatgcttcaaccaacacaaaccctctttggagaacaaagttttccattcaagttgataactctgatccaaattttcatgatcttgcatt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29366355 |
taaccaaagttgatgcttcaaccaacacaaaccctctttggagaacaaagttttccattcaagttgataactctgatccaaattttcatgatcttgcatt |
29366256 |
T |
|
| Q |
207 |
gaatgttgaagtttatagcagagaccctgttttctttacagagaaacttcatggatcagctactgttcttctcaaagagtttcttgctaaagggttgctg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29366255 |
gaatgttgaagtttatagcagagacccttttttctttacagagaaacttcatggatcagctactgttcttctcaaagagtttcttgctaaagggttgctg |
29366156 |
T |
|
| Q |
307 |
aatgatgagggtttaaggcaagggagtgaagaagttggaagctatcagttaaggaagaagaaatctggtaaaccaggtggatttgttgatgt |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29366155 |
aatgatgagggtttaaggcaagggagtgaagaagttggaagctatcagttaaggaagaagaaatctggtaaaccaagtggatttgttgatgt |
29366064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University