View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9533A_low_210 (Length: 230)

Name: NF9533A_low_210
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9533A_low_210
NF9533A_low_210
[»] chr8 (8 HSPs)
chr8 (86-225)||(4599090-4599229)
chr8 (86-225)||(23615577-23615716)
chr8 (86-225)||(31960639-31960778)
chr8 (86-203)||(30887009-30887126)
chr8 (86-204)||(34852704-34852822)
chr8 (87-149)||(34740667-34740729)
chr8 (87-149)||(2378228-2378290)
chr8 (93-151)||(26758754-26758812)
[»] chr7 (8 HSPs)
chr7 (86-225)||(518500-518639)
chr7 (86-225)||(4581843-4581982)
chr7 (86-225)||(16730291-16730430)
chr7 (86-225)||(45296497-45296636)
chr7 (86-203)||(37468012-37468129)
chr7 (87-151)||(25676344-25676408)
chr7 (87-149)||(581735-581797)
chr7 (87-140)||(581469-581522)
[»] chr6 (8 HSPs)
chr6 (86-225)||(2523978-2524117)
chr6 (86-225)||(25086976-25087115)
chr6 (86-225)||(30592749-30592888)
chr6 (86-225)||(34783489-34783628)
chr6 (86-222)||(29918817-29918953)
chr6 (86-222)||(10839620-10839756)
chr6 (87-151)||(7807631-7807695)
chr6 (93-147)||(5173320-5173374)
[»] chr5 (9 HSPs)
chr5 (86-225)||(669741-669880)
chr5 (86-225)||(2851136-2851275)
chr5 (86-225)||(35858667-35858806)
chr5 (86-222)||(21119372-21119508)
chr5 (86-225)||(10642533-10642672)
chr5 (86-213)||(9616694-9616821)
chr5 (86-204)||(30985157-30985275)
chr5 (86-204)||(15295695-15295813)
chr5 (95-151)||(41308190-41308246)
[»] chr4 (5 HSPs)
chr4 (86-225)||(26496866-26497005)
chr4 (86-225)||(36667990-36668129)
chr4 (86-225)||(49318340-49318479)
chr4 (86-129)||(34150878-34150921)
chr4 (87-149)||(20254617-20254678)
[»] chr3 (8 HSPs)
chr3 (86-225)||(21913029-21913168)
chr3 (86-225)||(50901903-50902042)
chr3 (86-222)||(41950072-41950208)
chr3 (86-225)||(33047951-33048090)
chr3 (86-222)||(14638-14774)
chr3 (86-204)||(40997293-40997411)
chr3 (87-151)||(5409894-5409958)
chr3 (88-133)||(45691835-45691880)
[»] chr2 (6 HSPs)
chr2 (86-225)||(9302924-9303063)
chr2 (86-225)||(12391566-12391705)
chr2 (88-222)||(35466933-35467067)
chr2 (86-203)||(37426022-37426139)
chr2 (86-204)||(42453409-42453527)
chr2 (87-149)||(45326201-45326263)
[»] chr1 (3 HSPs)
chr1 (86-225)||(50579800-50579939)
chr1 (87-151)||(25699932-25699996)
chr1 (87-151)||(33112737-33112801)


Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 86 - 225
Target Start/End: Complemental strand, 4599229 - 4599090
Alignment:
Q  86 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4599229 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 4599130  T
Q  186 atttcatcatctcattgtctatatcgtagtattattaatt 225  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4599129 atttcatcatctcattgtctatatcgtagtattattaatt 4599090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 86 - 225
Target Start/End: Original strand, 23615577 - 23615716
Alignment:
Q  86 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 185  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23615577 aatctaccactcttatttgttagatgtacaaaccgctattactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 23615676  T
Q  186 atttcatcatctcattgtctatatcgtagtattattaatt 225  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  23615677 atttcatcatctcattgtctatatcgtagtattattaatt 23615716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 86 - 225
Target Start/End: Original strand, 31960639 - 31960778
Alignment:
Q  86 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 185  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31960639 aatctaccactcttatttgttagatgtataaactgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 31960738  T
Q  186 atttcatcatctcattgtctatatcgtagtattattaatt 225  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31960739 atttcatcatctcattgtctatatcgtagtattattaatt 31960778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 86 - 203
Target Start/End: Complemental strand, 30887126 - 30887009
Alignment:
Q  86 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30887126 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 30887027  T
Q  186 atttcatcatctcattgt 203  Q
    ||||||||||||||||||    
T  30887026 atttcatcatctcattgt 30887009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 86 - 204
Target Start/End: Original strand, 34852704 - 34852822
Alignment:
Q  86 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34852704 aatctaccactcttatttgttagatgtacaaaccgctcttactactattttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 34852803  T
Q  186 atttcatcatctcattgtc 204  Q
    |||||||||||||||||||    
T  34852804 atttcatcatctcattgtc 34852822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 149
Target Start/End: Complemental strand, 34740729 - 34740667
Alignment:
Q  87 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacg 149  Q
    ||||| ||||| ||||||||| ||||||||||| ||| |||||||| ||||||||||||||||    
T  34740729 atctatcactcatatttgttacatgtacaaaccactcctactactattttgttgttgtcaacg 34740667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 87 - 149
Target Start/End: Complemental strand, 2378290 - 2378228
Alignment:
Q  87 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacg 149  Q
    ||||| ||||||||||||||| ||||||||||| ||| ||||||| |||||||| | ||||||    
T  2378290 atctatcactcttatttgttacatgtacaaaccactcctactactgctttgttgctctcaacg 2378228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 26758754 - 26758812
Alignment:
Q  93 cactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgac 151  Q
    ||||||||||||||| ||||||| ||| ||| |||| ||||||||||| ||||||||||    
T  26758754 cactcttatttgttacatgtacagaccactcctacttctactttgttgctgtcaacgac 26758812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 86 - 225
Target Start/End: Original strand, 518500 - 518639
Alignment:
Q  86 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  518500 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 518599  T
Q  186 atttcatcatctcattgtctatatcgtagtattattaatt 225  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  518600 atttcatcatctcattgtctatatcgtagtattattaatt 518639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 86 - 225
Target Start/End: Complemental strand, 4581982 - 4581843
Alignment:
Q  86 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4581982 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 4581883  T
Q  186 atttcatcatctcattgtctatatcgtagtattattaatt 225  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4581882 atttcatcatctcattgtctatatcgtagtattattaatt 4581843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 86 - 225
Target Start/End: Original strand, 16730291 - 16730430
Alignment:
Q  86 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16730291 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 16730390  T
Q  186 atttcatcatctcattgtctatatcgtagtattattaatt 225  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  16730391 atttcatcatctcattgtctatatcgtagtattattaatt 16730430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 86 - 225
Target Start/End: Original strand, 45296497 - 45296636
Alignment:
Q  86 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45296497 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 45296596  T
Q  186 atttcatcatctcattgtctatatcgtagtattattaatt 225  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  45296597 atttcatcatctcattgtctatatcgtagtattattaatt 45296636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 86 - 203
Target Start/End: Complemental strand, 37468129 - 37468012
Alignment:
Q  86 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 185  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37468129 aatctaccactcttatttattagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 37468030  T
Q  186 atttcatcatctcattgt 203  Q
    ||||||||||||||||||    
T  37468029 atttcatcatctcattgt 37468012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 151
Target Start/End: Complemental strand, 25676408 - 25676344
Alignment:
Q  87 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgac 151  Q
    ||||| || |||||||||||| ||||||||||| ||| |||||||||||||||| ||||||||||    
T  25676408 atctatcattcttatttgttacatgtacaaaccactcctactactactttgttgctgtcaacgac 25676344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 149
Target Start/End: Original strand, 581735 - 581797
Alignment:
Q  87 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacg 149  Q
    ||||| ||||||||||||||| |||||||||||  || |||||||| |||||||  |||||||    
T  581735 atctatcactcttatttgttacatgtacaaaccattcctactactattttgttgccgtcaacg 581797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 581469 - 581522
Alignment:
Q  87 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttg 140  Q
    ||||| ||||||||||||||| ||||||||| |  || ||||||||||||||||    
T  581469 atctatcactcttatttgttacatgtacaaatcattcctactactactttgttg 581522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 86 - 225
Target Start/End: Original strand, 2523978 - 2524117
Alignment:
Q  86 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2523978 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 2524077  T
Q  186 atttcatcatctcattgtctatatcgtagtattattaatt 225  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  2524078 atttcatcatctcattgtctatatcgtagtattattaatt 2524117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 86 - 225
Target Start/End: Complemental strand, 25087115 - 25086976
Alignment:
Q  86 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25087115 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 25087016  T
Q  186 atttcatcatctcattgtctatatcgtagtattattaatt 225  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  25087015 atttcatcatctcattgtctatatcgtagtattattaatt 25086976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 86 - 225
Target Start/End: Original strand, 30592749 - 30592888
Alignment:
Q  86 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30592749 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 30592848  T
Q  186 atttcatcatctcattgtctatatcgtagtattattaatt 225  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30592849 atttcatcatctcattgtctatatcgtagtattattaatt 30592888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 86 - 225
Target Start/End: Complemental strand, 34783628 - 34783489
Alignment:
Q  86 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34783628 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 34783529  T
Q  186 atttcatcatctcattgtctatatcgtagtattattaatt 225  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34783528 atttcatcatctcattgtctatatcgtagtattattaatt 34783489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 86 - 222
Target Start/End: Complemental strand, 29918953 - 29918817
Alignment:
Q  86 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29918953 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 29918854  T
Q  186 atttcatcatctcattgtctatatcgtagtattatta 222  Q
    |||||||||||||||||||||||||||||||||||||    
T  29918853 atttcatcatctcattgtctatatcgtagtattatta 29918817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 86 - 222
Target Start/End: Original strand, 10839620 - 10839756
Alignment:
Q  86 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10839620 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 10839719  T
Q  186 atttcatcatctcattgtctatatcgtagtattatta 222  Q
    ||||||  |||||||||||||||||||||||||||||    
T  10839720 atttcaatatctcattgtctatatcgtagtattatta 10839756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 151
Target Start/End: Original strand, 7807631 - 7807695
Alignment:
Q  87 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgac 151  Q
    ||||| ||||||||||||||| || || ||| | ||| |||||||||||||||| ||||||||||    
T  7807631 atctatcactcttatttgttacatctaaaaatcactcctactactactttgttgatgtcaacgac 7807695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 147
Target Start/End: Complemental strand, 5173374 - 5173320
Alignment:
Q  93 cactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 147  Q
    ||||||||||||||| ||||||||| | ||  |||||||||||| ||||||||||    
T  5173374 cactcttatttgttacatgtacaaatcacttctactactactttattgttgtcaa 5173320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 86 - 225
Target Start/End: Original strand, 669741 - 669880
Alignment:
Q  86 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  669741 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 669840  T
Q  186 atttcatcatctcattgtctatatcgtagtattattaatt 225  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  669841 atttcatcatctcattgtctatatcgtagtattattaatt 669880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 86 - 225
Target Start/End: Complemental strand, 2851275 - 2851136
Alignment:
Q  86 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2851275 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 2851176  T
Q  186 atttcatcatctcattgtctatatcgtagtattattaatt 225  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  2851175 atttcatcatctcattgtctatatcgtagtattattaatt 2851136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 86 - 225
Target Start/End: Complemental strand, 35858806 - 35858667
Alignment:
Q  86 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 185  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35858806 aatctaccactcttatttattagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 35858707  T
Q  186 atttcatcatctcattgtctatatcgtagtattattaatt 225  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  35858706 atttcatcatctcattgtctatatcgtagtattattaatt 35858667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 86 - 222
Target Start/End: Complemental strand, 21119508 - 21119372
Alignment:
Q  86 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21119508 aatctaccactcttatttgttagatgtacaaaccgctcttactactattttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 21119409  T
Q  186 atttcatcatctcattgtctatatcgtagtattatta 222  Q
    |||||||||||||||||||||||||||||||||||||    
T  21119408 atttcatcatctcattgtctatatcgtagtattatta 21119372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 86 - 225
Target Start/End: Original strand, 10642533 - 10642672
Alignment:
Q  86 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 185  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10642533 aatctaccactcttatttgttagatgtacaaaccgcttttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 10642632  T
Q  186 atttcatcatctcattgtctatatcgtagtattattaatt 225  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  10642633 atttcatcatcccattgtctatatcgtagtattattaatt 10642672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 86 - 213
Target Start/End: Complemental strand, 9616821 - 9616694
Alignment:
Q  86 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9616821 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 9616722  T
Q  186 atttcatcatctcattgtctatatcgta 213  Q
    |||||||||||||||| |||||||||||    
T  9616721 atttcatcatctcattatctatatcgta 9616694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 86 - 204
Target Start/End: Original strand, 30985157 - 30985275
Alignment:
Q  86 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30985157 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcatccaaagtgaattgtgagta 30985256  T
Q  186 atttcatcatctcattgtc 204  Q
    |||||||||||||||||||    
T  30985257 atttcatcatctcattgtc 30985275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 86 - 204
Target Start/End: Original strand, 15295695 - 15295813
Alignment:
Q  86 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 185  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  15295695 aatctaccactcttatttgttagatgtacaaaccgttcttactactactttgttgttgtcaacgactgcttgaggcttcctctaaagtgaattgtgagta 15295794  T
Q  186 atttcatcatctcattgtc 204  Q
    |||||||||||||||||||    
T  15295795 atttcatcatctcattgtc 15295813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 41308190 - 41308246
Alignment:
Q  95 ctcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgac 151  Q
    ||||||||||||| |||||||||||  || ||||| |||||||||| ||||||||||    
T  41308190 ctcttatttgttatatgtacaaaccattcctactaatactttgttgctgtcaacgac 41308246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 86 - 225
Target Start/End: Original strand, 26496866 - 26497005
Alignment:
Q  86 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26496866 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 26496965  T
Q  186 atttcatcatctcattgtctatatcgtagtattattaatt 225  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26496966 atttcatcatctcattgtctatatcgtagtattattaatt 26497005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 86 - 225
Target Start/End: Complemental strand, 36668129 - 36667990
Alignment:
Q  86 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36668129 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 36668030  T
Q  186 atttcatcatctcattgtctatatcgtagtattattaatt 225  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  36668029 atttcatcatctcattgtctatatcgtagtattattaatt 36667990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 86 - 225
Target Start/End: Complemental strand, 49318479 - 49318340
Alignment:
Q  86 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49318479 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 49318380  T
Q  186 atttcatcatctcattgtctatatcgtagtattattaatt 225  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  49318379 atttcatcatctcattgtctatatcgtagtattattaatt 49318340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 34150878 - 34150921
Alignment:
Q  86 aatctaccactcttatttgttagatgtacaaaccgctcttacta 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  34150878 aatctaccactcttatttgttagatgtacaaaccgctcttacta 34150921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 149
Target Start/End: Complemental strand, 20254678 - 20254617
Alignment:
Q  87 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacg 149  Q
    ||||| |||||||||| |||| |||| |||||| |||||||||||||||||||| | ||||||    
T  20254678 atctatcactcttatt-gttacatgttcaaaccactcttactactactttgttgctatcaacg 20254617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 86 - 225
Target Start/End: Complemental strand, 21913168 - 21913029
Alignment:
Q  86 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21913168 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 21913069  T
Q  186 atttcatcatctcattgtctatatcgtagtattattaatt 225  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  21913068 atttcatcatctcattgtctatatcgtagtattattaatt 21913029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 86 - 225
Target Start/End: Complemental strand, 50902042 - 50901903
Alignment:
Q  86 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50902042 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 50901943  T
Q  186 atttcatcatctcattgtctatatcgtagtattattaatt 225  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  50901942 atttcatcatctcattgtctatatcgtagtattattaatt 50901903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 86 - 222
Target Start/End: Complemental strand, 41950208 - 41950072
Alignment:
Q  86 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41950208 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 41950109  T
Q  186 atttcatcatctcattgtctatatcgtagtattatta 222  Q
    |||||||||||||||||||||||||||||||||||||    
T  41950108 atttcatcatctcattgtctatatcgtagtattatta 41950072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 86 - 225
Target Start/End: Original strand, 33047951 - 33048090
Alignment:
Q  86 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 185  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33047951 aatctaccactcttatttgttagatgtacaaactgctcttactactactttgttgttgtcaacgactgcttgagacttcctccaaagtgaattgtgagta 33048050  T
Q  186 atttcatcatctcattgtctatatcgtagtattattaatt 225  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33048051 atttcatcatctcattgtctatatcgtagtattattaatt 33048090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 86 - 222
Target Start/End: Complemental strand, 14774 - 14638
Alignment:
Q  86 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14774 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 14675  T
Q  186 atttcatcatctcattgtctatatcgtagtattatta 222  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  14674 attttatcatctcattatctatatcgtagtattatta 14638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 86 - 204
Target Start/End: Original strand, 40997293 - 40997411
Alignment:
Q  86 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40997293 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 40997392  T
Q  186 atttcatcatctcattgtc 204  Q
    |||||||||||||||||||    
T  40997393 atttcatcatctcattgtc 40997411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 151
Target Start/End: Original strand, 5409894 - 5409958
Alignment:
Q  87 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgac 151  Q
    ||||| ||||||||||| ||| || || ||||| ||| |||||||||||||||| ||||||||||    
T  5409894 atctatcactcttatttattacatctaaaaaccactcctactactactttgttgatgtcaacgac 5409958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 45691880 - 45691835
Alignment:
Q  88 tctaccactcttatttgttagatgtacaaaccgctcttactactac 133  Q
    |||| ||||||||||||||| ||||||||||| ||| |||||||||    
T  45691880 tctatcactcttatttgttacatgtacaaaccactcctactactac 45691835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 86 - 225
Target Start/End: Original strand, 9302924 - 9303063
Alignment:
Q  86 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9302924 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 9303023  T
Q  186 atttcatcatctcattgtctatatcgtagtattattaatt 225  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  9303024 atttcatcatctcattgtctatatcgtagtattattaatt 9303063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 86 - 225
Target Start/End: Complemental strand, 12391705 - 12391566
Alignment:
Q  86 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12391705 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 12391606  T
Q  186 atttcatcatctcattgtctatatcgtagtattattaatt 225  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  12391605 atttcatcatctcattgtctatatcgtagtattattaatt 12391566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 35466933 - 35467067
Alignment:
Q  88 tctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagtaat 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35466933 tctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagtaat 35467032  T
Q  188 ttcatcatctcattgtctatatcgtagtattatta 222  Q
    |||||||||||||||||||||||||||||||||||    
T  35467033 ttcatcatctcattgtctatatcgtagtattatta 35467067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 86 - 203
Target Start/End: Complemental strand, 37426139 - 37426022
Alignment:
Q  86 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37426139 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 37426040  T
Q  186 atttcatcatctcattgt 203  Q
    ||||||||||||||||||    
T  37426039 atttcatcatctcattgt 37426022  T

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Target: chr2; HSP #5
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 86 - 204
Target Start/End: Original strand, 42453409 - 42453527
Alignment:
Q  86 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42453409 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactacttgaggcttcctccaaagtgaattgtgagta 42453508  T
Q  186 atttcatcatctcattgtc 204  Q
    |||||||||||||||||||    
T  42453509 atttcatcatctcattgtc 42453527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 87 - 149
Target Start/End: Complemental strand, 45326263 - 45326201
Alignment:
Q  87 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacg 149  Q
    ||||| ||||||||||||||| ||||||||| | ||| ||||||||| |||||| ||||||||    
T  45326263 atctatcactcttatttgttacatgtacaaatcactcctactactacgttgttgctgtcaacg 45326201  T

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Target: chr1 (Bit Score: 136; Significance: 4e-71; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 86 - 225
Target Start/End: Original strand, 50579800 - 50579939
Alignment:
Q  86 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50579800 aatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgactgcttgaggcttcctccaaagtgaattgtgagta 50579899  T
Q  186 atttcatcatctcattgtctatatcgtagtattattaatt 225  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  50579900 atttcatcatctcattgtctatatcgtagttttattaatt 50579939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 151
Target Start/End: Original strand, 25699932 - 25699996
Alignment:
Q  87 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgac 151  Q
    ||||| ||||| ||||||||| || || ||||| ||| |||||||||||||||| ||||||||||    
T  25699932 atctatcactcctatttgttacatctaaaaaccactcctactactactttgttgatgtcaacgac 25699996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 151
Target Start/End: Complemental strand, 33112801 - 33112737
Alignment:
Q  87 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaacgac 151  Q
    ||||| ||||||||||||||| || || ||||| ||  |||||||||||||||| ||||||||||    
T  33112801 atctatcactcttatttgttacatctaaaaaccacttctactactactttgttgatgtcaacgac 33112737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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