View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_213 (Length: 230)
Name: NF9533A_low_213
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_213 |
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| [»] scaffold0110 (3 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 13285 - 13061
Alignment:
| Q |
1 |
agcagcagcatgtgacaatatcaaattgtgagctacaatataaggctcagttcctgaatttccagcagtacaatttccatattcttttgaacaccttcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13285 |
agcagcagcatgtgacaatatcaaattgtgagctacaatataaggctcagttcctgaatttccagcagtacaatttccatattcttttgaacaccttcca |
13186 |
T |
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| Q |
101 |
ggggcaaaaaagccagtatcataaccaagtgcagcgataactcttggttcattgaaagtcatccagttcttaactctgtctccaaatgttttgaaacaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13185 |
ggggcaaaaaagccagtatcataaccaagtgcagcaataactcttggttcattgaaagtcatccagttcttaactctgtctccaaatgttttgaaacaaa |
13086 |
T |
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| Q |
201 |
aatctgcataatccgcaaaatcttt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
13085 |
aatctgcataatccgcaaaatcttt |
13061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 21022 - 20798
Alignment:
| Q |
1 |
agcagcagcatgtgacaatatcaaattgtgagctacaatataaggctcagttcctgaatttccagcagtacaatttccatattcttttgaacaccttcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21022 |
agcagcagcatgtgacaatatcaaattgtgagctacaatataaggctcagttcctgaatttccagcagtacaatttccatattcttttgaacaccttcca |
20923 |
T |
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| Q |
101 |
ggggcaaaaaagccagtatcataaccaagtgcagcgataactcttggttcattgaaagtcatccagttcttaactctgtctccaaatgttttgaaacaaa |
200 |
Q |
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| T |
20922 |
ggggcaaaaaagccagtatcataaccaagtgcagcaataactcttggttcattgaaagtcatccagttcttaactctgtctccaaatgttttgaaacaaa |
20823 |
T |
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| Q |
201 |
aatctgcataatccgcaaaatcttt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
20822 |
aatctgcataatccgcaaaatcttt |
20798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 30142 - 29918
Alignment:
| Q |
1 |
agcagcagcatgtgacaatatcaaattgtgagctacaatataaggctcagttcctgaatttccagcagtacaatttccatattcttttgaacaccttcca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
30142 |
agcagcagcatgtgacaatatcaaattgtgagctacagtataaggctcagttcctgaatttccagctgtacaatttccatattcttttgaacatcttcca |
30043 |
T |
|
| Q |
101 |
ggggcaaaaaagccagtatcataaccaagtgcagcgataactcttggttcattgaaagtcatccagttcttaactctgtctccaaatgttttgaaacaaa |
200 |
Q |
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||||||||||||||| ||||||||||||||||||| | |||||||||||||||||| |||||||| ||||||||||||||||||||||| || ||||||| |
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| T |
30042 |
ggggcaaaaaagccattatcataaccaagtgcagcaacaactcttggttcattgaaggtcatccaattcttaactctgtctccaaatgtcttaaaacaaa |
29943 |
T |
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| Q |
201 |
aatctgcataatccgcaaaatcttt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
29942 |
aatctgcataatccgcaaaatcttt |
29918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 31639108 - 31639059
Alignment:
| Q |
146 |
ggttcattgaaagtcatccagttcttaactctgtctccaaatgttttgaa |
195 |
Q |
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||||||||||| || ||||||| |||||||||||||||||| | |||||| |
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| T |
31639108 |
ggttcattgaaggtaatccagtgcttaactctgtctccaaaagctttgaa |
31639059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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