View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_216 (Length: 229)
Name: NF9533A_low_216
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_216 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 35784273 - 35784047
Alignment:
| Q |
1 |
agtctaaaagaaagtaacatttccgagtaacatctctcatgtacacacctatttgaaaatatgataccaaatcaaattagagaaattgcatttgcaaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35784273 |
agtctaaaagaaagtaacatttccgagtaacacctctcatgtacccacctatttgaaaatatgataccaaatcaaattagagaaattgcatttgcaaaac |
35784174 |
T |
|
| Q |
101 |
aggtgatcctcatcctccaaca---ccccgaaacgccacacacaatccaaatgtatatgtgactttgtagtttgtgtgctag-ttcttagtggtatttgt |
196 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
35784173 |
aggtgatcctcatcctccaacacccccccgaaacgccacacacaatccaaatgtatatgtgactttgtagtttgtgtgctagttttttagtggtatttgt |
35784074 |
T |
|
| Q |
197 |
cgtctgtaaaaggacataggaaagtat |
223 |
Q |
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||||||||||||||||||||||||||| |
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| T |
35784073 |
cgtctgtaaaaggacataggaaagtat |
35784047 |
T |
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