View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9533A_low_223 (Length: 227)

Name: NF9533A_low_223

Description: NF9533A

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF9533A_low_223

[»] chr6 (1 HSPs)

[»] chr8 (1 HSPs)

Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 1)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 153; E-Value: 3e-81

Query Start/End: Original strand, 18 - 211

Target Start/End: Original strand, 24125327 - 24125520

Alignment:

Q	18	ctaggtccgtttttccagagatagtctgacctagactcaccccccatcgccctactctattagctccaatataaaatcaaggccaatttccactcgtaat	117	Q
		\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	24125327	ctaggtccttgtttccagggatagtctgacctagactcaccccccatcgccctactctattagctccaatataaaatcaaggccaatttccactcataat	24125426	T

Q	118	aggtacatgatgtatgannnnnnncttcaacggaaccattttcagaaagaaaaacaagtggaaagttgattccacatgtgtcccatagagagca	211	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	24125427	aggtacatgatgtatgatttttttcttcaacggaaccattttcagaaagaaaaacaagtggaaagttgattccacatgtgtcctatagagagca	24125520	T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 42; E-Value: 0.000000000000005

Query Start/End: Original strand, 149 - 202

Target Start/End: Complemental strand, 45163287 - 45163235

Alignment:

Q	149	ggaaccattttcagaaagaaaaacaagtggaaagttgattccacatgtgtccca	202	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	45163287	ggaaccattttcagaaagaagaacaagtggaaagttgatt-cacatgtgtccca	45163235	T

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