View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_226 (Length: 227)
Name: NF9533A_low_226
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_226 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 30841485 - 30841261
Alignment:
| Q |
1 |
ggtgcaagtaagtgtaagtggatgaaaaagtttatgtttgacggggggtatgatgaattgatgagctcacacctggagagaagattgttgtgtaacaagc |
100 |
Q |
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| T |
30841485 |
ggtgcaagtaagtgtaagtggatgaaaaagtttatgtttgacggggggtatgatgaattgatgagcttacacctggagagaagattgtagtgtaacaacc |
30841386 |
T |
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| Q |
101 |
gcgagttggaagttgcaagtatgagttagacttagaagtat-acattacttagaaaagtgaaagtagagcacttataaataagattactcataaacctan |
199 |
Q |
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| T |
30841385 |
gtgagttggaagttgcaagtatgagttagacttagaagtataacattacttagaaaagtgaaggttgaacacttataaataagatgactcataaacctat |
30841286 |
T |
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| Q |
200 |
nnnnnnaaggttttgggtaaagatg |
224 |
Q |
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| T |
30841285 |
ttttttaaggttttgggtaaagatg |
30841261 |
T |
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