View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9533A_low_228 (Length: 227)

Name: NF9533A_low_228
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9533A_low_228
NF9533A_low_228
[»] chr4 (10 HSPs)
chr4 (80-195)||(46550708-46550823)
chr4 (80-185)||(17056615-17056720)
chr4 (88-192)||(47541819-47541925)
chr4 (80-185)||(41464804-41464911)
chr4 (80-185)||(52920089-52920197)
chr4 (85-180)||(15827131-15827229)
chr4 (80-176)||(47833504-47833601)
chr4 (83-186)||(36364873-36364972)
chr4 (128-185)||(39503556-39503615)
chr4 (88-173)||(46381481-46381568)
[»] chr1 (10 HSPs)
chr1 (80-185)||(16253029-16253134)
chr1 (80-185)||(24241478-24241583)
chr1 (80-185)||(41942781-41942886)
chr1 (80-185)||(21356794-21356899)
chr1 (88-185)||(34773429-34773528)
chr1 (80-185)||(39744171-39744276)
chr1 (87-191)||(38746028-38746133)
chr1 (87-185)||(2344969-2345068)
chr1 (107-185)||(48503922-48504000)
chr1 (83-185)||(7101359-7101464)
[»] chr3 (9 HSPs)
chr3 (80-185)||(44880254-44880359)
chr3 (80-189)||(1994852-1994961)
chr3 (80-185)||(22220210-22220316)
chr3 (80-184)||(2008400-2008506)
chr3 (80-190)||(22831176-22831286)
chr3 (91-185)||(39056888-39056981)
chr3 (109-185)||(26466362-26466438)
chr3 (80-165)||(28297695-28297780)
chr3 (128-185)||(45805583-45805640)
[»] chr7 (7 HSPs)
chr7 (80-189)||(8541427-8541537)
chr7 (80-185)||(34998528-34998635)
chr7 (80-185)||(10544991-10545098)
chr7 (106-185)||(39187986-39188065)
chr7 (128-180)||(32676800-32676852)
chr7 (88-185)||(45627424-45627524)
chr7 (139-195)||(15878797-15878853)
[»] chr8 (11 HSPs)
chr8 (80-189)||(42056676-42056785)
chr8 (80-197)||(30208187-30208305)
chr8 (90-189)||(39402038-39402140)
chr8 (80-190)||(5594779-5594889)
chr8 (80-184)||(1162119-1162222)
chr8 (80-185)||(40719897-40720005)
chr8 (88-190)||(35179155-35179258)
chr8 (80-188)||(31333164-31333273)
chr8 (80-167)||(42921385-42921472)
chr8 (85-185)||(36132676-36132776)
chr8 (80-141)||(30362020-30362082)
[»] chr5 (12 HSPs)
chr5 (80-185)||(33758794-33758899)
chr5 (84-166)||(23151436-23151518)
chr5 (83-190)||(2976451-2976556)
chr5 (80-176)||(34849451-34849548)
chr5 (87-175)||(30319817-30319906)
chr5 (80-185)||(20524606-20524711)
chr5 (83-185)||(10719746-10719849)
chr5 (80-165)||(37872203-37872291)
chr5 (148-188)||(37872302-37872342)
chr5 (80-192)||(8026460-8026577)
chr5 (80-177)||(3454259-3454356)
chr5 (80-136)||(42285218-42285275)
[»] chr2 (10 HSPs)
chr2 (80-185)||(3870024-3870133)
chr2 (92-185)||(36400857-36400952)
chr2 (80-185)||(11028779-11028885)
chr2 (80-191)||(28734072-28734183)
chr2 (91-185)||(38879517-38879612)
chr2 (80-185)||(37721449-37721555)
chr2 (91-185)||(3647418-3647513)
chr2 (106-184)||(30706182-30706258)
chr2 (80-185)||(6512081-6512191)
chr2 (80-139)||(3949319-3949378)
[»] scaffold0095 (1 HSPs)
scaffold0095 (90-189)||(35362-35464)
[»] chr6 (3 HSPs)
chr6 (80-185)||(2141242-2141348)
chr6 (83-190)||(7080148-7080257)
chr6 (91-185)||(25336928-25337023)
[»] scaffold0288 (1 HSPs)
scaffold0288 (106-185)||(18084-18163)
[»] scaffold0009 (1 HSPs)
scaffold0009 (106-193)||(25680-25767)
[»] scaffold1339 (1 HSPs)
scaffold1339 (80-185)||(59-165)


Alignment Details
Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 80 - 195
Target Start/End: Original strand, 46550708 - 46550823
Alignment:
Q  80 taataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatgga 179  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||    
T  46550708 taataaagagaaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtatgtgtttaaacattattgatttggtcttgtgaccatgga 46550807  T
Q  180 agaatatctccttatt 195  Q
    ||||||| || |||||    
T  46550808 agaatatttcattatt 46550823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 80 - 185
Target Start/End: Complemental strand, 17056720 - 17056615
Alignment:
Q  80 taataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttt-tatgtgtgtattcaaacattattgatttggtcttgtgaccatgg 178  Q
    ||||||||||||||||||||||||  |||||| |||||||  |||| ||| |||| |||||||||||||||||| |||||||||||||||||||||||||    
T  17056720 taataaagaggaaattgataaaaaa-atgattaaatattttaaggacaattttttatatgtgtgtattcaaacactattgatttggtcttgtgaccatgg 17056622  T
Q  179 aagaata 185  Q
    |||||||    
T  17056621 aagaata 17056615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 88 - 192
Target Start/End: Original strand, 47541819 - 47541925
Alignment:
Q  88 aggaaattgataaaaatgatgattgaatatttagaggagaatcttttta--tgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 185  Q
    |||||||||||||||| ||||||||||||||| ||||| ||||||||||  ||||||| | |||| |||||||||||| |||||||| |||| |||||||    
T  47541819 aggaaattgataaaaaagatgattgaatattttgaggaaaatctttttatgtgtgtgtgtccaaatattattgatttgatcttgtgatcatgaaagaata 47541918  T
Q  186 tctcctt 192  Q
    |||||||    
T  47541919 tctcctt 47541925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 80 - 185
Target Start/End: Original strand, 41464804 - 41464911
Alignment:
Q  80 taataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgta--ttcaaacattattgatttggtcttgtgaccatg 177  Q
    ||||||||| |||||||||||||| ||||||||| ||||| || |||||||||||||||||||||  || ||  |||||||||||| |||||||||||||    
T  41464804 taataaagaagaaattgataaaaaagatgattgagtattttgaagagaatctttttatgtgtgtatgtttaagtattattgatttgatcttgtgaccatg 41464903  T
Q  178 gaagaata 185  Q
     |||||||    
T  41464904 aaagaata 41464911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 185
Target Start/End: Original strand, 52920089 - 52920197
Alignment:
Q  80 taataaagaggaaattgat-aaaaatgatgattgaatatttagaggagaatcttttta--tgtgtgtattcaaacattattgatttggtcttgtgaccat 176  Q
    |||||||||| |||||||| |||||  ||||||||||||||  | |  ||||||||||  | | |||||| |||||||||||||||||||||||||||||    
T  52920089 taataaagagaaaattgataaaaaaaaatgattgaatatttttaagtaaatctttttatttatatgtatttaaacattattgatttggtcttgtgaccat 52920188  T
Q  177 ggaagaata 185  Q
    |||||||||    
T  52920189 ggaagaata 52920197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 15827131 - 15827229
Alignment:
Q  85 aagaggaaattgat-aaaaatgatgattgaatatttagaggagaatctttttatgtg--tgtattcaaacattattgatttggtcttgtgaccatggaa 180  Q
    ||||| |||||||| |||||  || ||||||||||| ||  ||||||||||||||||  |||||||||| |||||||||| ||||||||||||||||||    
T  15827131 aagagaaaattgatgaaaaaaaataattgaatattttgacaagaatctttttatgtgtgtgtattcaaatattattgattcggtcttgtgaccatggaa 15827229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 80 - 176
Target Start/End: Complemental strand, 47833601 - 47833504
Alignment:
Q  80 taataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgta--ttcaaacattattgatttggtcttgtgaccat 176  Q
    ||||||||||||||||||||||| | |||||||||||||| |||||   ||||||||||||||||  | ||| || ||| |||||||||||| ||||||    
T  47833601 taataaagaggaaattgataaaa-taatgattgaatattttgaggatggtctttttatgtgtgtatgtccaaccactatagatttggtcttgcgaccat 47833504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 186
Target Start/End: Original strand, 36364873 - 36364972
Alignment:
Q  83 taaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaaga 182  Q
    ||||||| |||||||||||||| ||||    ||||||  ||||  || ||||||| ||||| | ||||||||||||||||||||||| ||||||| || |    
T  36364873 taaagagaaaattgataaaaataatga----atattttaaggaccatatttttatatgtgtgtccaaacattattgatttggtcttgcgaccatgcaaca 36364968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 185
Target Start/End: Original strand, 39503556 - 39503615
Alignment:
Q  128 atctttttatgtgt--gtattcaaacattattgatttggtcttgtgaccatggaagaata 185  Q
    ||||||||||||||  || |||||||| ||||||||| ||||||||||||| ||||||||    
T  39503556 atctttttatgtgtatgtgttcaaacactattgatttagtcttgtgaccatagaagaata 39503615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 173
Target Start/End: Complemental strand, 46381568 - 46381481
Alignment:
Q  88 aggaaattgataaaaatgatgattgaatatttagaggagaatctttttatg--tgtgtattcaaacattattgatttggtcttgtgac 173  Q
    ||||||||||||||||  |||||||||| |||  |||| ||||| ||||||  |||||  ||||||| |||| |||||||||||||||    
T  46381568 aggaaattgataaaaaaaatgattgaatgtttttaggataatctctttatgtatgtgtgctcaaacactatttatttggtcttgtgac 46381481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 7e-39; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 80 - 185
Target Start/End: Complemental strand, 16253134 - 16253029
Alignment:
Q  80 taataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatgga 179  Q
    |||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||    
T  16253134 taataaggaggaaattgataaaaaagatgattgaatattttgaggagaatctttttatgtgtgtctccaaacattattgatttggtcttgtgaacatgga 16253035  T
Q  180 agaata 185  Q
    ||||||    
T  16253034 agaata 16253029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 80 - 185
Target Start/End: Complemental strand, 24241583 - 24241478
Alignment:
Q  80 taataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatgga 179  Q
    |||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||    
T  24241583 taataaggaggaaattgataaaaaagatgattgaatattttgaggagaatctttttatgtgtgtgtccaaacattattgatttggtcatgtgaccatgga 24241484  T
Q  180 agaata 185  Q
    ||||||    
T  24241483 agaata 24241478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 80 - 185
Target Start/End: Complemental strand, 41942886 - 41942781
Alignment:
Q  80 taataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatgga 179  Q
    |||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||| ||| | ||||||||||||||||||||||||||||||| |    
T  41942886 taataaggaggaaattgataaaaatgatgattgaatatttcgaagagaatctttttatgtatgtgtccaaacattattgatttggtcttgtgaccatgaa 41942787  T
Q  180 agaata 185  Q
    ||||||    
T  41942786 agaata 41942781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 80 - 185
Target Start/End: Complemental strand, 21356899 - 21356794
Alignment:
Q  80 taataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatgga 179  Q
    |||||| ||| ||||||||||||| ||||||||||||||| || |||||||||||||| ||||| | ||||||||||||||||||||||||||||||  |    
T  21356899 taataatgagaaaattgataaaaaagatgattgaatattttgaagagaatctttttatatgtgtgtccaaacattattgatttggtcttgtgaccataaa 21356800  T
Q  180 agaata 185  Q
    ||||||    
T  21356799 agaata 21356794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 88 - 185
Target Start/End: Original strand, 34773429 - 34773528
Alignment:
Q  88 aggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgta--ttcaaacattattgatttggtcttgtgaccatggaagaata 185  Q
    |||||||| |||||||  |||||||||||||| ||||||||||||||||||||||||  | ||||||||||||| |||||||||||| ||||||||||||    
T  34773429 aggaaattaataaaaaatatgattgaatattttgaggagaatctttttatgtgtgtatgtgcaaacattattgagttggtcttgtgatcatggaagaata 34773528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 80 - 185
Target Start/End: Original strand, 39744171 - 39744276
Alignment:
Q  80 taataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatgga 179  Q
    |||||| ||||||| |||||||||  |||||||| ||||  ||| ||||||||||||| ||||| | |||||||||||||||||||||||||||||| ||    
T  39744171 taataaggaggaaaatgataaaaaaaatgattgactattctgagaagaatctttttatatgtgtgtccaaacattattgatttggtcttgtgaccataga 39744270  T
Q  180 agaata 185  Q
    ||||||    
T  39744271 agaata 39744276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 87 - 191
Target Start/End: Original strand, 38746028 - 38746133
Alignment:
Q  87 gaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtat-tcaaacattattgatttggtcttgtgaccatggaagaata 185  Q
    ||||||||||| || || ||||||||||||||| ||||||||||| |||||| |||| | || || |||||||||||||||||||||| ||||||||||     
T  38746028 gaggaaattgaaaacaaagatgattgaatattttgaggagaatctatttatgggtgtgtgtccaaaattattgatttggtcttgtgacgatggaagaatg 38746127  T
Q  186 tctcct 191  Q
    ||||||    
T  38746128 tctcct 38746133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 87 - 185
Target Start/End: Complemental strand, 2345068 - 2344969
Alignment:
Q  87 gaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtg--tattcaaacattattgatttggtcttgtgaccatggaagaat 184  Q
    ||||||||||||||||| ||||||||||| |||  | || ||| ||||||||||||  ||| ||||||||||||||||||||||||||||| ||||||||    
T  2345068 gaggaaattgataaaaaagatgattgaattttttaaagaaaat-tttttatgtgtgcttatccaaacattattgatttggtcttgtgaccaaggaagaat 2344970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 185
Target Start/End: Complemental strand, 48504000 - 48503922
Alignment:
Q  107 tgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 185  Q
    ||||||| ||||| || ||||||| |||||| ||||| | |||| ||||||||||||||||| ||| ||||||||||||    
T  48504000 tgattgagtattttgatgagaatccttttatatgtgtgtccaaatattattgatttggtcttatgaacatggaagaata 48503922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 185
Target Start/End: Original strand, 7101359 - 7101464
Alignment:
Q  83 taaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtat----tcaaacattattgatttggtcttgtgaccatgg 178  Q
    ||||||||||||||||||||   ||||||||||||||  ||||  |||||||||||||||| |    || |||| ||||||||||||||| ||| |||||    
T  7101359 taaagaggaaattgataaaaga-atgattgaatattttaaggaccatctttttatgtgtgtgtatgttccaacactattgatttggtcttatgatcatgg 7101457  T
Q  179 aagaata 185  Q
     ||||||    
T  7101458 gagaata 7101464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 80 - 185
Target Start/End: Complemental strand, 44880359 - 44880254
Alignment:
Q  80 taataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatgga 179  Q
    |||||| ||||||||||||||||| ||||| ||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |    
T  44880359 taataaggaggaaattgataaaaaagatgactgaatattttgaggagaatcgttttatgtgtgtgttcaaacattattgatttggtcttgtgaccatgaa 44880260  T
Q  180 agaata 185  Q
    ||||||    
T  44880259 agaata 44880254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 80 - 189
Target Start/End: Original strand, 1994852 - 1994961
Alignment:
Q  80 taataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatgga 179  Q
    ||||||||||| |||||||||||| |||||||||||||||  |||||||||||||| ||||| | | |||||||||||||||||||||||||||||| |     
T  1994852 taataaagaggtaattgataaaaaagatgattgaatattttcaggagaatctttttgtgtgtttgtccaaacattattgatttggtcttgtgaccatagt 1994951  T
Q  180 agaatatctc 189  Q
    ||||||||||    
T  1994952 agaatatctc 1994961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 80 - 185
Target Start/End: Complemental strand, 22220316 - 22220210
Alignment:
Q  80 taataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatgg 178  Q
    |||||| |||||||||||||||||  ||||||||||||||| ||| ||||||||||||||||||| | ||||||||||||||||| |||| |||||||||    
T  22220316 taataaggaggaaattgataaaaaaagatgattgaatattttgagaagaatctttttatgtgtgtgtacaaacattattgatttgatcttttgaccatgg 22220217  T
Q  179 aagaata 185  Q
    |||||||    
T  22220216 aagaata 22220210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 80 - 184
Target Start/End: Complemental strand, 2008506 - 2008400
Alignment:
Q  80 taataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttt--tatgtgtgtattcaaacattattgatttggtcttgtgaccatg 177  Q
    |||||| ||| ||||||||||||| ||||||||||||||| ||||||||||||||  ||||||||| | |||| ||||||||||||||||||||| ||||    
T  2008506 taataaggagaaaattgataaaaaagatgattgaatattttgaggagaatctttttatatgtgtgtgtccaaatattattgatttggtcttgtgatcatg 2008407  T
Q  178 gaagaat 184  Q
    |||||||    
T  2008406 gaagaat 2008400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 80 - 190
Target Start/End: Original strand, 22831176 - 22831286
Alignment:
Q  80 taataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatgga 179  Q
    |||||| ||||||| ||||||||| ||||||||||||||| ||| ||||||||| ||||||||| | |||| ||||||||||| ||||||||||||  ||    
T  22831176 taataaggaggaaagtgataaaaaagatgattgaatattttgagaagaatctttatatgtgtgtgtccaaatattattgatttagtcttgtgaccagaga 22831275  T
Q  180 agaatatctcc 190  Q
    |||||||||||    
T  22831276 agaatatctcc 22831286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 91 - 185
Target Start/End: Original strand, 39056888 - 39056981
Alignment:
Q  91 aaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 185  Q
    |||| |||||||| ||||||||||||||| ||||| ||||||||||||||||| | |||||||||| |||||||||||| || ||||||||||||    
T  39056888 aaatcgataaaaa-gatgattgaatattttgaggaaaatctttttatgtgtgtgtccaaacattatagatttggtcttgcgatcatggaagaata 39056981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 185
Target Start/End: Original strand, 26466362 - 26466438
Alignment:
Q  109 attgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 185  Q
    |||||||||||  |  ||||||||||||| | ||| ||||||||||||| ||||| |||||||||||||||||||||    
T  26466362 attgaatattttaaaaagaatctttttatatatgtgttcaaacattattaatttgatcttgtgaccatggaagaata 26466438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 165
Target Start/End: Complemental strand, 28297780 - 28297695
Alignment:
Q  80 taataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggt 165  Q
    |||||||||||||||||||||||   ||||| |||||| |  |||||||||||||||| | | | | ||||| |||||||||||||    
T  28297780 taataaagaggaaattgataaaagaaatgatcgaatatgttaaggagaatctttttatatatatgtccaaactttattgatttggt 28297695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 185
Target Start/End: Original strand, 45805583 - 45805640
Alignment:
Q  128 atctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 185  Q
    |||||||||||||||| | |||||| |||||||||| |||||| | ||||||||||||    
T  45805583 atctttttatgtgtgtgtgcaaacactattgatttgatcttgtaatcatggaagaata 45805640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 80 - 189
Target Start/End: Complemental strand, 8541537 - 8541427
Alignment:
Q  80 taataaagaggaaattgataaaaa-tgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatgg 178  Q
    |||||| ||||||||||||||||| | |||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||      
T  8541537 taataaggaggaaattgataaaaaataatgattgaatattttgaggagaatctttttacgtgtgtgttcaaacattattgatttggtcttgtgaccataa 8541438  T
Q  179 aagaatatctc 189  Q
    |||||||||||    
T  8541437 aagaatatctc 8541427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 80 - 185
Target Start/End: Complemental strand, 34998635 - 34998528
Alignment:
Q  80 taataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttt--tatgtgtgtattcaaacattattgatttggtcttgtgaccatg 177  Q
    |||||| ||| |||||||||||||| |||||||||||||| ||||||||||||||  ||||||||| | |||||||||||||||||||||||||||||||    
T  34998635 taataaggagaaaattgataaaaataatgattgaatattttgaggagaatctttttatatgtgtgtgtccaaacattattgatttggtcttgtgaccatg 34998536  T
Q  178 gaagaata 185  Q
    ||||||||    
T  34998535 gaagaata 34998528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 185
Target Start/End: Complemental strand, 10545098 - 10544991
Alignment:
Q  80 taataaagaggaaattgataaa--aatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 177  Q
    ||||||||||||||||||||||  ||  ||||||||||||||  |  | ||||||||||||||||| | |||| | |||||||| |||||||||| | ||    
T  10545098 taataaagaggaaattgataaataaaaaatgattgaatattttaaaaataatctttttatgtgtgtctccaaatactattgattcggtcttgtgatcgtg 10544999  T
Q  178 gaagaata 185  Q
    ||||||||    
T  10544998 gaagaata 10544991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 106 - 185
Target Start/End: Original strand, 39187986 - 39188065
Alignment:
Q  106 atgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 185  Q
    ||||||||||||||  ||||  ||||||||||| |||| | |||| | ||||||||||||||| ||||||||||||||||    
T  39187986 atgattgaatattttaaggaccatctttttatgcgtgtgtccaaatactattgatttggtcttctgaccatggaagaata 39188065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 32676852 - 32676800
Alignment:
Q  128 atctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaa 180  Q
    |||||||||  ||||||| |||||| |||||||||||||||||||||||||||    
T  32676852 atctttttacatgtgtatccaaacactattgatttggtcttgtgaccatggaa 32676800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 185
Target Start/End: Original strand, 45627424 - 45627524
Alignment:
Q  88 aggaaattgataaaaatgatgattgaatatttagaggagaatcttttt-atgtgtgtat-tcaaa-cattattgatttggtcttgtgaccatggaagaat 184  Q
    ||||||||||||||||  |||||| |||||||  |||| ||| ||||| |||||||| | ||||| || ||||||||||||| |||||||||||||||||    
T  45627424 aggaaattgataaaaaaaatgattaaatattttaaggacaattttttttatgtgtgtgtgtcaaaacactattgatttggtcctgtgaccatggaagaat 45627523  T
Q  185 a 185  Q
    |    
T  45627524 a 45627524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 15878797 - 15878853
Alignment:
Q  139 tgtgtattcaaacattattgatttggtcttgtgaccatggaagaatatctccttatt 195  Q
    ||||||| |||||  |||||||||||||||||||| || |||||||||||| |||||    
T  15878797 tgtgtatccaaacgctattgatttggtcttgtgacaatagaagaatatctctttatt 15878853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 80 - 189
Target Start/End: Complemental strand, 42056785 - 42056676
Alignment:
Q  80 taataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatgga 179  Q
    |||||| ||| ||||||||||||| |||||||||||||||  | |||||||||||||||| ||| | |||||||||||||||||||||||||||||||||    
T  42056785 taataaggagaaaattgataaaaaagatgattgaatattttaaagagaatctttttatgtttgtgtccaaacattattgatttggtcttgtgaccatgga 42056686  T
Q  180 agaatatctc 189  Q
    ||||||||||    
T  42056685 agaatatctc 42056676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 80 - 197
Target Start/End: Complemental strand, 30208305 - 30208187
Alignment:
Q  80 taataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgt--gtattcaaacattattgatttggtcttgtgaccatg 177  Q
    |||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |  || | |||||||||||||||||||||| ||||||||    
T  30208305 taataaggaggaaattgataaaaaagatgattgaatattt-gaggagaatctttttatgtatatgtgtccaaacattattgatttggtcttatgaccatg 30208207  T
Q  178 gaagaatatctccttattct 197  Q
    |||||||| |||| ||||||    
T  30208206 gaagaatacctccatattct 30208187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 90 - 189
Target Start/End: Original strand, 39402038 - 39402140
Alignment:
Q  90 gaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtat--tcaaacattattgatttggtcttgtgaccatggaagaatat 186  Q
    ||||||||||||||  ||||||||||||||| ||||||||||||||||||| |||||  ||||| |||||||||||||||||||||||||||||||||||    
T  39402038 gaaattgataaaaaaagatgattgaatattttgaggagaatctttttatgtatgtatgttcaaatattattgatttggtcttgtgaccatggaagaatat 39402137  T
Q  187 ctc 189  Q
    |||    
T  39402138 ctc 39402140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 80 - 190
Target Start/End: Complemental strand, 5594889 - 5594779
Alignment:
Q  80 taataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatgga 179  Q
    |||||| ||||||| ||||||||| ||||||||||||||| ||| ||||||||| ||||||||| | |||| ||||||||||| ||||||||||||  ||    
T  5594889 taataaggaggaaagtgataaaaaagatgattgaatattttgagaagaatctttatatgtgtgtgtccaaatattattgatttagtcttgtgaccagaga 5594790  T
Q  180 agaatatctcc 190  Q
    |||||||||||    
T  5594789 agaatatctcc 5594779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 80 - 184
Target Start/End: Original strand, 1162119 - 1162222
Alignment:
Q  80 taataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatgga 179  Q
    ||||||||||||||||||||| || ||  ||||||||||| |||||||||| |||||||||||| |||||| |||| |||||||||||||||| ||||||    
T  1162119 taataaagaggaaattgataagaaagac-attgaatattttgaggagaatccttttatgtgtgtgttcaaatattactgatttggtcttgtgatcatgga 1162217  T
Q  180 agaat 184  Q
     ||||    
T  1162218 cgaat 1162222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 80 - 185
Target Start/End: Original strand, 40719897 - 40720005
Alignment:
Q  80 taataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatcttttta--tgtgtgtattcaaacattattgatttggtcttgtgaccat 176  Q
    |||||| |||||||||||||||||  ||||||||||||||| ||||||||||||||||  ||||||| | ||||||||||| ||||  |||| |||||||    
T  40719897 taataaggaggaaattgataaaaaaagatgattgaatattttgaggagaatctttttatgtgtgtgtgtccaaacattattaatttaatcttttgaccat 40719996  T
Q  177 ggaagaata 185  Q
    |||||||||    
T  40719997 ggaagaata 40720005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 88 - 190
Target Start/End: Complemental strand, 35179258 - 35179155
Alignment:
Q  88 aggaaattgataaaaatga-tgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaatat 186  Q
    ||||||||||||||||  | | ||||||||||| ||| ||||||||||||| ||||| | |||||||||||||||||||||| |||||||| |||||||     
T  35179258 aggaaattgataaaaaaaaattattgaatattttgagaagaatctttttatatgtgtgtccaaacattattgatttggtcttatgaccatgaaagaatac 35179159  T
Q  187 ctcc 190  Q
    ||||    
T  35179158 ctcc 35179155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 80 - 188
Target Start/End: Original strand, 31333164 - 31333273
Alignment:
Q  80 taataaagaggaaattgataaaaatgatgattgaatatttagaggagaatcttttta--tgtgtgtattcaaacattattgatttggtcttgtgaccatg 177  Q
    |||||| ||| ||| ||||||||| |||||||||||||||  || | ||||||||||  ||||||||  |||||||| |||||||||||||||||| |||    
T  31333164 taataaggagaaaactgataaaaaagatgattgaatattttaagtaaaatctttttatgtgtgtgtaaccaaacatt-ttgatttggtcttgtgactatg 31333262  T
Q  178 gaagaatatct 188  Q
    |||||||||||    
T  31333263 gaagaatatct 31333273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 80 - 167
Target Start/End: Complemental strand, 42921472 - 42921385
Alignment:
Q  80 taataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtct 167  Q
    |||||| || |||||||||||||| ||||||||| ||||| ||| ||||||||||||| | ||| ||||||||||||| |||||||||    
T  42921472 taataaggatgaaattgataaaaaagatgattgattattttgagaagaatctttttatatttgtgttcaaacattattaatttggtct 42921385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 185
Target Start/End: Complemental strand, 36132776 - 36132676
Alignment:
Q  85 aagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaat 184  Q
    ||||||||||| |||||||  |||||| |||||||  |  |  |||||||||||||||||| |||| | |||| |||| |||||||||| || |||||||    
T  36132776 aagaggaaattaataaaaaaaatgattaaatattttaaaaaccatctttttatgtgtgtatccaaatactattaatttagtcttgtgactatagaagaat 36132677  T
Q  185 a 185  Q
    |    
T  36132676 a 36132676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 30362020 - 30362082
Alignment:
Q  80 taataaagaggaaattgataaaaa-tgatgattgaatatttagaggagaatctttttatgtgt 141  Q
    |||||| || |||||||||||||| | || ||||||||||| ||||||||| |||||||||||    
T  30362020 taataaggacgaaattgataaaaaataataattgaatattttgaggagaatttttttatgtgt 30362082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 4e-34; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 80 - 185
Target Start/End: Complemental strand, 33758899 - 33758794
Alignment:
Q  80 taataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatgga 179  Q
    ||||||| |||||||||||||||| |||||||||||| || ||||||||||||||||||||||| | |||||| |||||||||| |||||||||||||||    
T  33758899 taataaaaaggaaattgataaaaaagatgattgaatagtttgaggagaatctttttatgtgtgtgtccaaacagtattgatttgatcttgtgaccatgga 33758800  T
Q  180 agaata 185  Q
    ||||||    
T  33758799 agaata 33758794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 84 - 166
Target Start/End: Original strand, 23151436 - 23151518
Alignment:
Q  84 aaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtc 166  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||    
T  23151436 aaagaagaaattgataaaaatgatgattgaatattttgaggagaatctttttatgtgtgtgtccaaacattattgatttggtc 23151518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 83 - 190
Target Start/End: Original strand, 2976451 - 2976556
Alignment:
Q  83 taaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaaga 182  Q
    |||||| ||||||||||||||  ||||||||||||||  ||||  |||||||||||||||  | |||||| ||||||||||||||| |||||||||||||    
T  2976451 taaagaagaaattgataaaaaaaatgattgaatattttaaggaccatctttttatgtgtg--tccaaacactattgatttggtcttatgaccatggaaga 2976548  T
Q  183 atatctcc 190  Q
    ||| ||||    
T  2976549 atacctcc 2976556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 80 - 176
Target Start/End: Complemental strand, 34849548 - 34849451
Alignment:
Q  80 taataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 176  Q
    |||||| ||| |||||||||||||  ||||||||||||||| ||||||||||||||||| ||||| |  ||||||||||||||| ||||| |||||||    
T  34849548 taataaggagaaaattgataaaaaaagatgattgaatattttgaggagaatctttttatatgtgtgtcgaaacattattgatttcgtcttatgaccat 34849451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 87 - 175
Target Start/End: Complemental strand, 30319906 - 30319817
Alignment:
Q  87 gaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtg--tattcaaacattattgatttggtcttgtgacca 175  Q
    ||||||||||||||||| |||||||||||||||  | |||||| |||||||||| |  ||| |||||||||||||||||||||||||||||    
T  30319906 gaggaaattgataaaaaagatgattgaatattttaaagagaat-tttttatgtgcgcgtatccaaacattattgatttggtcttgtgacca 30319817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 185
Target Start/End: Original strand, 20524606 - 20524711
Alignment:
Q  80 taataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatgga 179  Q
    ||||||||||||||||||||||||  ||||||||||||||  |  |  ||||||| |||||||| | |||||| ||||||||| || |||||| ||||||    
T  20524606 taataaagaggaaattgataaaaaaaatgattgaatattttaaacatcatcttttgatgtgtgtgtccaaacagtattgatttagttttgtgatcatgga 20524705  T
Q  180 agaata 185  Q
    ||||||    
T  20524706 agaata 20524711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 83 - 185
Target Start/End: Complemental strand, 10719849 - 10719746
Alignment:
Q  83 taaagaggaaattgataaaaatga-tgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaag 181  Q
    ||||||| |||||||||||||  | |||||||||||||  ||||  || ||||||||||||| | |||||| |||| |||||||||| ||||||||||||    
T  10719849 taaagagaaaattgataaaaaaaaatgattgaatattttaaggaccatttttttatgtgtgtgtccaaacactattaatttggtcttatgaccatggaag 10719750  T
Q  182 aata 185  Q
    ||||    
T  10719749 aata 10719746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 80 - 165
Target Start/End: Original strand, 37872203 - 37872291
Alignment:
Q  80 taataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatcttttta--tgtgtgtattcaaacattattgatttggt 165  Q
    |||||| |||||||||||||||||  ||||||||||||||| || |||||||||||||  ||||||| | |||| ||||||||||||||    
T  37872203 taataaggaggaaattgataaaaaaagatgattgaatattttgatgagaatctttttatgtgtgtgtgtccaaatattattgatttggt 37872291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 37872302 - 37872342
Alignment:
Q  148 aaacattattgatttggtcttgtgaccatggaagaatatct 188  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  37872302 aaacattattgatttggtcttgtgaccatggaagaatatct 37872342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 192
Target Start/End: Complemental strand, 8026577 - 8026460
Alignment:
Q  80 taataaagaggaaattgata---aaaatgatgattgaatatttagaggagaatctttttatgtgtgta--ttcaaacattattgatttggtcttgtgacc 174  Q
    ||||||||||||||||||||   ||||  ||||||||||||||  | ||  |||||||||||||| |   | |||||| ||||||||||||||||||||     
T  8026577 taataaagaggaaattgatataaaaaaaaatgattgaatattttaaagaccatctttttatgtgtatgcgtccaaacagtattgatttggtcttgtgact 8026478  T
Q  175 atggaagaatatctcctt 192  Q
    || |||||||| ||||||    
T  8026477 atagaagaatacctcctt 8026460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 177
Target Start/End: Complemental strand, 3454356 - 3454259
Alignment:
Q  80 taataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 177  Q
    ||||||| | |||||||||||||| |||||||||||||||  || ||||||||| ||| | |||    ||| |||||||||||| |||||| ||||||    
T  3454356 taataaaaaagaaattgataaaaaagatgattgaatattttaagaagaatctttatatatttgtgactaaatattattgatttgatcttgtaaccatg 3454259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 42285275 - 42285218
Alignment:
Q  80 taataaagaggaaattgataaaaatga-tgattgaatatttagaggagaatcttttta 136  Q
    |||||| |||||||||||||||||  | ||||||||||||| ||||||||||||||||    
T  42285275 taataaggaggaaattgataaaaaaaaatgattgaatattttgaggagaatcttttta 42285218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 80 - 185
Target Start/End: Complemental strand, 3870133 - 3870024
Alignment:
Q  80 taataaagaggaaattgataaaaatgatgattgaatatttagaggagaatcttttta----tgtgtgtattcaaacattattgatttggtcttgtgacca 175  Q
    |||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||    ||||||| |  ||||||||||||||||||||||||||||    
T  3870133 taataaggaggaaattgataaaaaagatgattgaatattttgaggagaatctttttatgtctgtgtgtgtcaaaacattattgatttggtcttgtgacca 3870034  T
Q  176 tggaagaata 185  Q
    ||||||||||    
T  3870033 tggaagaata 3870024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 92 - 185
Target Start/End: Complemental strand, 36400952 - 36400857
Alignment:
Q  92 aattgataaaaatgatgattgaatatttagaggagaatctttttatgt--gtgtattcaaacattattgatttggtcttgtgaccatggaagaata 185  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||  |||| ||||||||||||||||||||||||| |||||||||||||||    
T  36400952 aattgataaaaaagatgattgaatattttgaggagaatctttttatgtgtgtgtgttcaaacattattgatttggtcttgagaccatggaagaata 36400857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 80 - 185
Target Start/End: Complemental strand, 11028885 - 11028779
Alignment:
Q  80 taataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatgg 178  Q
    |||||| |||||||||||||||||  |||||||||||||||  |||||||||||||||||||||| | |||||||||||||||||||||| |||| ||||    
T  11028885 taataaggaggaaattgataaaaaaagatgattgaatattttaaggagaatctttttatgtgtgtgtccaaacattattgatttggtcttttgacgatgg 11028786  T
Q  179 aagaata 185  Q
    |||||||    
T  11028785 aagaata 11028779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 80 - 191
Target Start/End: Original strand, 28734072 - 28734183
Alignment:
Q  80 taataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatgg 178  Q
    ||||||||| ||||||||||||||  ||||| ||| ||||| ||||||||| ||||||||||||| | |||||||||||||||||||||||||||| |||    
T  28734072 taataaagaagaaattgataaaaaaagatgagtgagtattttgaggagaat-tttttatgtgtgtgtccaaacattattgatttggtcttgtgaccgtgg 28734170  T
Q  179 aagaatatctcct 191  Q
    ||||||| |||||    
T  28734171 aagaatacctcct 28734183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 91 - 185
Target Start/End: Complemental strand, 38879612 - 38879517
Alignment:
Q  91 aaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 185  Q
    |||||||||||||  ||||||| ||||||| ||||||||||||||||||||||| | ||||||||||| ||||||||||||||| |||||||||||    
T  38879612 aaattgataaaaaaagatgatttaatattttgaggagaatctttttatgtgtgtgtccaaacattattaatttggtcttgtgactatggaagaata 38879517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 80 - 185
Target Start/End: Complemental strand, 37721555 - 37721449
Alignment:
Q  80 taataaagaggaaattgataaaaatga-tgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatgg 178  Q
    |||||| |||||||||||||||||  | ||||||||||||| || ||||||||||||||| | || | |||| |||||||||||||||||||||||||||    
T  37721555 taataaggaggaaattgataaaaaaaaatgattgaatattttgaagagaatctttttatgcgcgtgtccaaatattattgatttggtcttgtgaccatgg 37721456  T
Q  179 aagaata 185  Q
    |||||||    
T  37721455 aagaata 37721449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 185
Target Start/End: Complemental strand, 3647513 - 3647418
Alignment:
Q  91 aaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgt--gtattcaaacattattgatttggtcttgtgaccatggaagaata 185  Q
    ||||||||||||| |||||||||||||||  | |||||| |||||||||||  || ||||||||||||||||||||||||||||||| |||||||||    
T  3647513 aaattgataaaaaagatgattgaatattttaaagagaat-tttttatgtgttcgtgttcaaacattattgatttggtcttgtgaccaaggaagaata 3647418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 106 - 184
Target Start/End: Original strand, 30706182 - 30706258
Alignment:
Q  106 atgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaat 184  Q
    ||||||||||||||  ||||  ||||||||||||||||   |||||| |||||||||||||||||||||||| ||||||    
T  30706182 atgattgaatattttaaggaccatctttttatgtgtgtc--caaacactattgatttggtcttgtgaccatgtaagaat 30706258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 185
Target Start/End: Original strand, 6512081 - 6512191
Alignment:
Q  80 taataaagaggaaattgataaaaatga---tgattgaatattt-agaggagaatctttttatgtgtgtatt--caaacattattgatttggtcttgtgac 173  Q
    ||||||||||||||||||||||||  |   ||||||||||||| ||||   | ||||||||||||||| |   |||||| ||||||||||||||||||||    
T  6512081 taataaagaggaaattgataaaaaaaaaaatgattgaatattttagagttca-tctttttatgtgtgtgtgtccaaacactattgatttggtcttgtgac 6512179  T
Q  174 catggaagaata 185  Q
    ||||||| ||||    
T  6512180 catggaataata 6512191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 3949319 - 3949378
Alignment:
Q  80 taataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgt 139  Q
    ||||||| | ||||||||||||||  |||||||||||||| ||||||||  |||||||||    
T  3949319 taataaaaaagaaattgataaaaaaaatgattgaatattttgaggagaaattttttatgt 3949378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 90 - 189
Target Start/End: Complemental strand, 35464 - 35362
Alignment:
Q  90 gaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtat--tcaaacattattgatttggtcttgtgaccatggaagaatat 186  Q
    ||||||||||||||  ||||||||||||||| ||||||||||||||||||| |||||  ||||| |||||||||||||||||||||||||||||||||||    
T  35464 gaaattgataaaaaaagatgattgaatattttgaggagaatctttttatgtatgtatgttcaaatattattgatttggtcttgtgaccatggaagaatat 35365  T
Q  187 ctc 189  Q
    |||    
T  35364 ctc 35362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 80 - 185
Target Start/End: Original strand, 2141242 - 2141348
Alignment:
Q  80 taataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatgg 178  Q
    |||||| |||||||||||||||||| ||||||||||||||| ||| | |||||||||||||| || | ||||| |||||||| || ||||||||||||||    
T  2141242 taataatgaggaaattgataaaaatagatgattgaatattttgagaaaaatctttttatgtgggtgtccaaacgttattgatatgatcttgtgaccatgg 2141341  T
Q  179 aagaata 185  Q
    |||||||    
T  2141342 aagaata 2141348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 83 - 190
Target Start/End: Complemental strand, 7080257 - 7080148
Alignment:
Q  83 taaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgt--gtgtattcaaacattattgatttggtcttgtgaccatggaa 180  Q
    |||||| |||||||||||||| ||| ||||||||||| || ||||||||||||||||  |||| | |||||||||||||||||||| ||||||||| |||    
T  7080257 taaagacgaaattgataaaaaagattattgaatattttgaagagaatctttttatgtgtgtgtgtccaaacattattgatttggtcatgtgaccatagaa 7080158  T
Q  181 gaatatctcc 190  Q
    ||||| ||||    
T  7080157 gaatacctcc 7080148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 91 - 185
Target Start/End: Original strand, 25336928 - 25337023
Alignment:
Q  91 aaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtg--tattcaaacattattgatttggtcttgtgaccatggaagaata 185  Q
    ||||||||||||| |||||||||||||||  | |||||| ||||||||||||  | | ||||||||||||||||| ||||||||||| |||||||||    
T  25336928 aaattgataaaaaagatgattgaatattttaaagagaat-tttttatgtgtgcgtgtccaaacattattgatttgatcttgtgaccaaggaagaata 25337023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 106 - 185
Target Start/End: Original strand, 18084 - 18163
Alignment:
Q  106 atgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 185  Q
    |||||||||||||| ||||||||||||||| | ||||| ||||||||||||||||| | |||||| ||||||||||||||    
T  18084 atgattgaatattttgaggagaatctttttctatgtgtgttcaaacattattgattggatcttgtaaccatggaagaata 18163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 106 - 193
Target Start/End: Complemental strand, 25767 - 25680
Alignment:
Q  106 atgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaatatctcctta 193  Q
    |||||||||||||| || || |||||||||| |||||| | ||||||||||||||||||||| |||| |||||||||||| |||||||    
T  25767 atgattgaatattttgatgaaaatctttttacgtgtgtgtccaaacattattgatttggtctcgtgatcatggaagaatacctcctta 25680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1339 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold1339
Description:

Target: scaffold1339; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 80 - 185
Target Start/End: Original strand, 59 - 165
Alignment:
Q  80 taataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgt--gtgtattcaaacattattgatttggtcttgtgaccatg 177  Q
    ||||||||| ||||||||||||||  ||||||||||||||  | ||  ||||||||||||  |||| | |||||| ||||||||||||||||||| ||||    
T  59 taataaagatgaaattgataaaaaa-atgattgaatatttttaagactatctttttatgtatgtgtgtccaaacactattgatttggtcttgtgatcatg 157  T
Q  178 gaagaata 185  Q
    ||||||||    
T  158 gaagaata 165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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