View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_235 (Length: 222)
Name: NF9533A_low_235
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_235 |
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Alignment Details
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 29 - 205
Target Start/End: Complemental strand, 30810502 - 30810322
Alignment:
| Q |
29 |
atattatactataatcatttgttaaaagaaggactaatgaatattgaagatagaataagtaaataaatgttga--agagtttttatagtgtaaaagaaat |
126 |
Q |
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| T |
30810502 |
atattatattataatcatttgttaaaagaaggactaatcaatattgaagatagaataagtaaataaatgttgaatagagtttttatagtgtaaaagaaat |
30810403 |
T |
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| Q |
127 |
ttgaaggtaactatgtatt--tatataatatagtagatgaagaggggtagacatacacatttaatgtgaggggagattgtg |
205 |
Q |
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| T |
30810402 |
ttgaaggtaactttgtatttatatataatatagtagatgaagagaggtagacatacacatttaatgtgaggggagattgtg |
30810322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 30820182 - 30820124
Alignment:
| Q |
29 |
atattatactataatcatttgttaaaagaaggactaatgaatattgaagatagaataag |
87 |
Q |
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| T |
30820182 |
atattatattatagtcatttgttaaaagaaggaccaatcaatattgaagttcgaataag |
30820124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 30814976 - 30814920
Alignment:
| Q |
29 |
atattatactataatcatttgttaaaagaaggactaatgaatattgaagatagaataa |
86 |
Q |
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| T |
30814976 |
atattatattataatcatttgttaaaagaa-gaccaatcaatattgaaaataaaataa |
30814920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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