View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_239 (Length: 221)
Name: NF9533A_low_239
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_239 |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 197
Target Start/End: Original strand, 29561221 - 29561399
Alignment:
| Q |
19 |
agaactgatcagcattcattcaagcgattagttttctcagcatttgaagaaagatggcaatgcaaagggaaaactgctttgccattttgctgcctcatca |
118 |
Q |
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| T |
29561221 |
agaactaatcagcgttcattcaagtgataagttttctcagcatttgaagaaagatggcaatgcaaagggaaaactgctttgccattctgctgcctcgtca |
29561320 |
T |
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| Q |
119 |
acaacgacgagttgtttccaatgtcttggaacggcattcgctttggaaccagtaatccacctctagcagcatgtttttt |
197 |
Q |
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| T |
29561321 |
acaatgaagagttgttcccaatgtcttggaacggcattcgttttggaactagtagtccacctctagcagcatgtgtttt |
29561399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 29557421 - 29557541
Alignment:
| Q |
19 |
agaactgatcagcattcattcaagcgattagttttctcagcatttgaagaaagatggcaatgcaaagggaaaactgctttgccattttgctgcctcatca |
118 |
Q |
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|||||| ||||||||||||||||| | | ||||| ||||||||||||||||| |||||||||||||| |||||||||||||||| | || ||| |||||| |
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| T |
29557421 |
agaacttatcagcattcattcaagtgctaagttt-ctcagcatttgaagaaatatggcaatgcaaagagaaaactgctttgccactctg-tgcttcatca |
29557518 |
T |
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| Q |
119 |
acaacgacgagttgtttccaatg |
141 |
Q |
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|||| |||||||| ||||||||| |
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| T |
29557519 |
acaatgacgagttatttccaatg |
29557541 |
T |
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