View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_241 (Length: 219)
Name: NF9533A_low_241
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_241 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 44009632 - 44009433
Alignment:
| Q |
20 |
atatttgaattatcatatacaatatgatgctaaatccaacttgttcagggcaatacattacgagtgtcaccatctatcaaatgatcaatgagcatttccc |
119 |
Q |
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| T |
44009632 |
atatttgaattatcatatacaatatgatgctaaatccaacttgttcagggcaatacattacgagtgtcaccatctaccaaatgatcaatgagcatttccc |
44009533 |
T |
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| Q |
120 |
ttatccgaacaaatatgtgaaagatctttaaattccttttctctttctttcctatccaatttaactataactatttctgttttatacttttctatatatt |
219 |
Q |
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| T |
44009532 |
ttatccaaacaaatatgtgaaagaactttaaattccttttctctttctttcctatccaatttaactataattatttctgttttatacttttctatatatt |
44009433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 47 - 216
Target Start/End: Complemental strand, 44005678 - 44005513
Alignment:
| Q |
47 |
tgctaaatccaacttgttcag---ggcaatacattacgagtgtcaccatctatcaaatgatcaatgagcatttcccttatccgaacaaatatgtgaaaga |
143 |
Q |
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|||| ||||||||||||||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||| | ||||||| |
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| T |
44005678 |
tgctgaatccaacttgttcatcatggcattacattaccagtgtcaccatctaccaaatgatcaatgagcatttcccttatccaaacaaatctctgaaaga |
44005579 |
T |
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| Q |
144 |
tctttaaattccttttctctttctttcctatccaatttaactataactatttctgttttatacttttctatat |
216 |
Q |
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| T |
44005578 |
tct-----ttccttttctc--tctttcctatccaatttaactgtaattaattttgctttctacttttctatat |
44005513 |
T |
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