View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_249 (Length: 213)
Name: NF9533A_low_249
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_249 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 8e-88; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 23 - 194
Target Start/End: Original strand, 7839613 - 7839784
Alignment:
| Q |
23 |
cactaagagcacaaactctttccaaagcagacctccatttcttcaccttctccgattcctttccaaatctcttttcatgttgaatcattgcaatttcata |
122 |
Q |
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| T |
7839613 |
cactaagagcacaaactcttttcaaagcagacctccatttcttcaccttctccgattcctttccaaatctcttttcatgttgaatcattgcaatttcata |
7839712 |
T |
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| Q |
123 |
gctctttctttgatgtctaacatcagaagcttccaccttataaaatataacaaaaacagttttccctttcat |
194 |
Q |
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| T |
7839713 |
gctctttctctgatgtctaacatcagaagcttccaccttataaaatataacaaaaacagttttccctttcat |
7839784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 23 - 176
Target Start/End: Original strand, 7762944 - 7763098
Alignment:
| Q |
23 |
cactaagagcacaaactctttccaaagcagacctccatttcttcaccttctccgattcctttccaaatctcttttcatgttgaatcattgcaatttcata |
122 |
Q |
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|||| ||||||||||| | | |||||| |||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
7762944 |
cactgagagcacaaacacgattcaaagccaacctccatgctttcaccttctccgattcctttccaaatctattttcatgtttcatcattgcaatttcata |
7763043 |
T |
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| Q |
123 |
gctctttctttga-tgtctaacatcagaagcttccaccttataaaatataacaaa |
176 |
Q |
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| T |
7763044 |
actattcctctgactacctaacatctgaaggttctatcttataaaaaataacaaa |
7763098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 7755491 - 7755571
Alignment:
| Q |
23 |
cactaagagcacaaactctttccaaagcagacctccatttcttcaccttctccgattcctttccaaatctcttttcatgtt |
103 |
Q |
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|||| ||||||||||||| | |||||| || ||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
7755491 |
cactgagagcacaaactcgattcaaagccaacttccatgctttcaccttctccgattcccttccaaatctcttttcatgtt |
7755571 |
T |
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