View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_3 (Length: 501)
Name: NF9533A_low_3
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 3e-80; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 214 - 373
Target Start/End: Complemental strand, 32957050 - 32956891
Alignment:
| Q |
214 |
tagtagtattccattttctctgggggcagagagatacgaatacaaagtttatgaatagaattggatttagtaaagctaaataaaagcctcgtgatcgaag |
313 |
Q |
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| T |
32957050 |
tagtagtattccattttctttgggggcagagagatacgaatacagagtttatgaatagaattggatttagtaaagctaaataaaagcctcgtgatcgaag |
32956951 |
T |
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| Q |
314 |
aaggcagatcctggaagactgttccctctgtcacgtgcccacttttgactacccaatcaa |
373 |
Q |
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| T |
32956950 |
aaggcagatcctggaagactgttccctctgtcacgtgcccacttttgactacccaatcaa |
32956891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 32957256 - 32957106
Alignment:
| Q |
1 |
gaggatgtggtgtgcgacgaacaatctcttattgactctagcatggattaggaatatgaaagttttggcaattaatgaaggcattagattaccgag---- |
96 |
Q |
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| T |
32957256 |
gaggatgtggtgtgcgacgaacaatctcttattgtctctagcatggattaggaatatgaaagttttggcaattaatgaaggcattagattaccgagaatg |
32957157 |
T |
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| Q |
97 |
-----cgagatgtgtatgtttagcattaatattgggattagagcaaggtta |
142 |
Q |
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| T |
32957156 |
caggtagagaagtgtatgtttagcattaatattgggattagagcaaggtta |
32957106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 439 - 495
Target Start/End: Complemental strand, 32956825 - 32956769
Alignment:
| Q |
439 |
ataaattcaaaccatttcatacaacattgcaacatactaatattgtcacactcattc |
495 |
Q |
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| T |
32956825 |
ataaattcaaaccatttcatacaacattgcaacatactaatattgtcacaatcattc |
32956769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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