View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_32 (Length: 376)
Name: NF9533A_low_32
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 8946835 - 8947195
Alignment:
| Q |
1 |
aagatgcaccatcaacttgatttccggctgctgttgttgaagtgtgggttccatgaccatttgtgtcacgtgtagtgttcactattgttgtattaatgtt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8946835 |
aagatgcaccatcaacttgatttccggctgctgttgttgaagtgtgggttccatgaccatttgtgtcacgtgtagtgttcactattgttgtattaatgtt |
8946934 |
T |
|
| Q |
101 |
cgaatttttcgcagataaccctttattgaagaatctagctccaatgagtttcttgttgcaaaatgatgaatcgttggtatttgcaaattgacataacttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||| |
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| T |
8946935 |
cgaatttttcgcagataaccctttattgaagaatcttgctccaatgagtttcttgttgcaaaatgatgaattgttgctattttcaaattgacataacttc |
8947034 |
T |
|
| Q |
201 |
cctttccactttgaagggattttagtcattccattatcattaaaactttcactttcgggccaaacacctgggtcaatcaaaccaataatgacatcttgac |
300 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8947035 |
cctttccattttgaagggattttagtcattccattatcattaaaactttcactctcgggccaaacacctgagtcaatcaaaccaataatgacatcttgac |
8947134 |
T |
|
| Q |
301 |
caaacttagaagctggccatgccccttcaaatggattgaggccaaggaattgtggtgagtg |
361 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8947135 |
caaacttagaagctggccatgccccttcaaatggattgaggccaaggaattgtggtgagtg |
8947195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 3 - 360
Target Start/End: Complemental strand, 8962256 - 8961899
Alignment:
| Q |
3 |
gatgcaccatcaacttgatttccggctgctgttgttgaagtgtgggttccatgaccatttgtgtcacgtgtagtgttcactattgttgtattaatgttcg |
102 |
Q |
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|||||||||| ||| ||||| || ||| | |||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||| |||| | | |
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| T |
8962256 |
gatgcaccattaacctgattccccgctaccgttgttgaagtgtgggttccatgaccatctgtgtcacgtgtagagttcactgttgttgtatcaatggtgg |
8962157 |
T |
|
| Q |
103 |
aatttttcgcagataaccctttattgaagaatctagctccaatgagtttcttgttgcaaaatgatgaatcgttggtatttgcaaattgacataacttccc |
202 |
Q |
| |
|
|||| |||| | |||||||| ||||||||||| |||||||||||||| ||||||||||| ||||||| |||||||||| ||||||||||||| ||||| |
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| T |
8962156 |
aattcatcgccaagaaccctttgttgaagaatcttgctccaatgagttttttgttgcaaaaagatgaattgttggtattttcaaattgacataatttccc |
8962057 |
T |
|
| Q |
203 |
tttccactttgaagggattttagtcattccattatcattaaaactttcactttcgggccaaacacctgggtcaatcaaaccaataatgacatcttgacca |
302 |
Q |
| |
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|||||| |||||||| |||||||| | |||||||||||| |||||||||||||| ||||||||||| | ||||||| ||||| ||||||||||| ||| |
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| T |
8962056 |
tttccattttgaaggaattttagtaaatccattatcattgaaactttcactttctggccaaacaccggtatcaatcacaccaacaatgacatcttttcca |
8961957 |
T |
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| Q |
303 |
aacttagaagctggccatgccccttcaaatggattgaggccaaggaattgtggtgagt |
360 |
Q |
| |
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| | ||||||| |||| |||||| | ||||| || ||||||||||| ||||||| |
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|
| T |
8961956 |
taatcagaagctagccacacccctttgtagggattaagaccaaggaattgaggtgagt |
8961899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 3 - 362
Target Start/End: Complemental strand, 8973658 - 8973299
Alignment:
| Q |
3 |
gatgcaccatcaacttgatttccggctgctgttgttgaagtgtgggttccatgaccatttgtgtcacgtgtagtgttcactattgttgtattaatgttcg |
102 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||| || ||||||||||||||||||||||| | ||||| ||||| || | | || | |
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| T |
8973658 |
gatgcaccatcaacttgattcccagctgctgttgttgaagtgtgtgtcccatgaccatttgtgtcacgtgtggagttcaaaattgtgttagttagatttg |
8973559 |
T |
|
| Q |
103 |
aatttttcgcagataaccctttattgaagaatctagctccaatgagtttcttgttgcaaaatgatgaatcgttggtatttgcaaattgacataacttccc |
202 |
Q |
| |
|
|| ||| || | |||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||| | ||| |
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| T |
8973558 |
gatattttgccaaaaaccctttgttgaagaatctagctccaatgagtttcttgttgcaaaaagatgaattgttggtattttcaaattgacataattgccc |
8973459 |
T |
|
| Q |
203 |
tttccactttgaagggattttagtcattccattatcattaaaactttcactttcgggccaaacacctgggtcaatcaaaccaataatgacatcttgacca |
302 |
Q |
| |
|
|||||| |||||||| |||| || ||| ||||||| || |||||||||||||| ||||||||||| | ||||||| ||||| ||||||||||| ||| |
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| T |
8973458 |
tttccattttgaaggaatttgaggcatgtcattatctttgaaactttcactttctggccaaacaccggtatcaatcataccaacaatgacatctttgcca |
8973359 |
T |
|
| Q |
303 |
aacttagaagctggccatgccccttcaaatggattgaggccaaggaattgtggtgagtga |
362 |
Q |
| |
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| | |||||||||||||||||||| ||| ||| |||||||||||||||||||||||| |
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| T |
8973358 |
taatcagaagctggccatgcccctttgtatgaattaaggccaaggaattgtggtgagtga |
8973299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 21687974 - 21688346
Alignment:
| Q |
1 |
aagatgcaccatcaacttgatttccggctgctgttgttgaagtgtgggttccatgaccatttgtgtcacgtgtagtgttcactattgttgtattaatgtt |
100 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||| || || || ||||| |||||||||||||| | ||||| ||||||||| ||||||| |
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| T |
21687974 |
aagatgcaccatcaactttgcttccagctgctgttgttgaagtatgtgtcccgtgaccgtttgtgtcacgtgtggagttcaaaattgttgtactaatgtt |
21688073 |
T |
|
| Q |
101 |
cgaatttttcgcagataaccctttattgaagaatctagctccaatgagtttcttgttgcaaaatgatgaatcg------------ttggtatttgcaaat |
188 |
Q |
| |
|
|| | ||| || | || ||||| |||||||| |||||||||||||||||||||||||| || ||| ||| | |||| ||| ||||| |
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| T |
21688074 |
ggagtgttttgccaagaagcctttgttgaagaacctagctccaatgagtttcttgttgcacaaagataaattgattgactggatgttggaattctcaaat |
21688173 |
T |
|
| Q |
189 |
tgacataacttccctttccactttgaagggattttagtcattccattatcattaaaactttcactttcgggccaaacacctgggtcaatcaaaccaataa |
288 |
Q |
| |
|
|||||||| | |||||||| ||||| || |||||||||||||||| ||| |||||||||||||||| ||||||||||| | ||| || | ||||| || |
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| T |
21688174 |
tgacataattggcctttccattttgagggtattttagtcattccatcatctctaaaactttcactttctggccaaacaccagtgtctattacaccaacaa |
21688273 |
T |
|
| Q |
289 |
tgacatcttgaccaaacttagaagctggccatgccccttcaaatggattgaggccaaggaattgtggtgagtg |
361 |
Q |
| |
|
||| ||||| |||||| | ||||| ||||||||||||| | ||||||| |||||||| ||||| |||||||| |
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| T |
21688274 |
tgatatctttaccaaaatcagaagttggccatgcccctctatatggattaaggccaagaaattgaggtgagtg |
21688346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 34963779 - 34963857
Alignment:
| Q |
201 |
cctttccactttgaagggattttagtcattccattatcattaaaactttcactttcgggccaaacacctgggtcaatca |
279 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||| ||| || || || |||||||| |||||||| |||| |||||||| |
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| T |
34963779 |
cctttccattttgaaggaattttagtcattccatcatctttgaagctctcactttctggccaaactcctgtgtcaatca |
34963857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 34963707 - 34963752
Alignment:
| Q |
126 |
ttgaagaatctagctccaatgagtttcttgttgcaaaatgatgaat |
171 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||| |
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|
| T |
34963707 |
ttgaagaatttagctccaatgagtttcttgttgcaaagagatgaat |
34963752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 34963606 - 34963657
Alignment:
| Q |
22 |
ttccggctgctgttgttgaagtgtgggttccatgaccatttgtgtcacgtgt |
73 |
Q |
| |
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|||| ||||||||||||||||| || ||||||||||| | |||||||||||| |
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|
| T |
34963606 |
ttccagctgctgttgttgaagtatgagttccatgaccttctgtgtcacgtgt |
34963657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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