View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_39 (Length: 363)
Name: NF9533A_low_39
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 22 - 345
Target Start/End: Complemental strand, 3036837 - 3036513
Alignment:
| Q |
22 |
aaccatacctcatctttggcatttgtgttcatgcatgattgagccatcagaagcaattcaccatcttcaaattgagcataatttgcattttttc-cccat |
120 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3036837 |
aaccatacctcatctttggcatttgtgttcatgcatgattgagccatcagaagcaattcaccatcttcaaattgagcataatttgcattttttttcccat |
3036738 |
T |
|
| Q |
121 |
aggggacattcattctgatagtgtcccagctcgtggcacttataacactcaacagaatctgtgttgattcttcccctaccctttcctctagcacctgaat |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3036737 |
aggggacattcattctgatagtgtcccagcttgtgacacttataacactcaatagaatctttgttgattcttcccctaccctttcctctagcacctgaat |
3036638 |
T |
|
| Q |
221 |
gccctcttcctctaccaaatcccatagatcctcttcctccattcgaatccttcaaagcttgctcaagatcaatttcttgattctgagattttatgcgtcg |
320 |
Q |
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|
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3036637 |
gccctcttcctctaccatatcccatagatcctcttcctccattcgaaaccttcaaagcttgctcaatatcaatttcttgattctgagattttatgcgtcg |
3036538 |
T |
|
| Q |
321 |
ttcttgaacaagtaagctactctga |
345 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
3036537 |
ttcttgaacaagtaagctactctga |
3036513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 22 - 335
Target Start/End: Complemental strand, 16863584 - 16863270
Alignment:
| Q |
22 |
aaccatacctcatctttggcatttgtgttcatgcatgattgagccatcagaagcaattcaccatcttcaaattgagcataatttgcattttttccccata |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | | |||| | |||||||| | |||||| |
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|
| T |
16863584 |
aaccatacctcatctttggcatttgtgttcaaacatgattgagccatcagaagcaattcaccatcttcaaactcaacatagtgtgcattttcttcccata |
16863485 |
T |
|
| Q |
122 |
ggggacattcattctgatagtgtcccagctcgtggcac-ttataacactcaacagaatctgtgttgattcttcccctaccctttcctctagcacctgaat |
220 |
Q |
| |
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| ||||||||||| |||||||||||||||| ||| ||| || || || |||||| | |||| |||||||| |||||| |||||||| |||||||| |
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| T |
16863484 |
gaggacattcattttgatagtgtcccagcttgtgacactttgtagcattcaacacttccattgttaattcttcctctaccccttcctctaacacctgaac |
16863385 |
T |
|
| Q |
221 |
gccctcttcctctaccaaatcccatagatcctcttcctccattcgaatccttcaaagcttgctcaagatcaatttcttgattctgagattttatgcgtcg |
320 |
Q |
| |
|
||||||||||||||||| |||| | |||||||||||| ||||| || ||||||||||||| |||| ||||||||||||||| |||| ||| |||||| | |
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|
| T |
16863384 |
gccctcttcctctaccatatcctacagatcctcttccaccattagatgccttcaaagcttgttcaatatcaatttcttgattttgagttttcatgcgttg |
16863285 |
T |
|
| Q |
321 |
ttcttgaacaagtaa |
335 |
Q |
| |
|
||||||||||||||| |
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|
| T |
16863284 |
ttcttgaacaagtaa |
16863270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 22 - 341
Target Start/End: Complemental strand, 20529205 - 20528888
Alignment:
| Q |
22 |
aaccatacctcatctttggcatttgtgttcatgcatgattgagccatcagaagcaattcaccatcttcaaattgagcataatttgcattttttccccata |
121 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||| ||||||||| ||| | ||||||||||||||||||| ||||||||||| |||| | |||||| |
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|
| T |
20529205 |
aaccatacctcatctttgacatttgtgttcaatcatgtttgagccatgagatgaaattcaccatcttcaaattcagcataatttgaatttggttcccata |
20529106 |
T |
|
| Q |
122 |
ggggacattcattctgatagtgtcccagctcgtggcacttataacactcaacagaatctgtgttgattcttcccctaccctttcctctagcacctgaatg |
221 |
Q |
| |
|
| |||||||||||||||||||||| |||| ||| ||||||| || ||||| ||||| |||| |||||||| | || ||||||| | |||| | |
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|
| T |
20529105 |
gatgacattcattctgatagtgtcctagcttgtgacacttattgcattcaactaaatct-tgttaattcttcctccacatcttcctct-ttgcttgaacg |
20529008 |
T |
|
| Q |
222 |
ccctcttcctctaccaaatcccatagatcctcttcctccattcgaatccttcaaagcttgctcaagatcaatttcttgattctgagattttatgcgtcgt |
321 |
Q |
| |
|
|||||||||||| ||| |||||| |||||||||||| ||||| ||| ||||||||||||||||| |||| ||||||| || |||||||| |||||| || |
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|
| T |
20529007 |
ccctcttcctctcccatatcccacagatcctcttccaccattagaaaccttcaaagcttgctcagtatcagtttcttggttttgagatttcatgcgttgt |
20528908 |
T |
|
| Q |
322 |
tcttgaacaagtaagctact |
341 |
Q |
| |
|
|||||||||||||| ||||| |
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|
| T |
20528907 |
tcttgaacaagtaaactact |
20528888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 22 - 344
Target Start/End: Original strand, 40612799 - 40613109
Alignment:
| Q |
22 |
aaccatacctcatctttggcatttgtgttcatgcatgattgagccatcagaagcaattcaccatcttcaaattgagcataatttgcattttttccccata |
121 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||| ||||| ||||| ||||| ||||||||||||||||| | |||| | || ||||||| | |||||| |
|
|
| T |
40612799 |
aaccatacctcatctttggcgtttgtgttcaagcaagattgggccataagaagtaattcaccatcttcaaacttagcaaagttagcattttcttcccata |
40612898 |
T |
|
| Q |
122 |
ggggacattcattctgatagtgtcccagctcgtggcacttataacactcaacagaatctgtgttgattcttcccctaccctttcctctagcacctgaatg |
221 |
Q |
| |
|
| ||||| |||||||| |||||||||| || | | |||||| ||||||||||| || ||||||||| ||||||||||||||||| | |
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|
| T |
40612899 |
gaggacactcattctggtagtgtcccaacttgcgacacttaaaacactcaacacttgctttgttgattc------------ttcctctagcacctgaacg |
40612986 |
T |
|
| Q |
222 |
ccctcttcctctaccaaatcccatagatcctcttcctccattcgaatccttcaaagcttgctcaagatcaatttcttgattctgagattttatgcgtcgt |
321 |
Q |
| |
|
||||||||||||||| | |||| | |||||| | ||||| ||| ||||||||||||| |||| |||||| |||||||| |||||||| ||| || || |
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|
| T |
40612987 |
tcctcttcctctaccataccccacgaaacctctttcaccattggaaaccttcaaagcttgttcaacatcaatgtcttgattttgagatttcatgtgttgt |
40613086 |
T |
|
| Q |
322 |
tcttgaacaagtaagctactctg |
344 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
40613087 |
tcttgaacaagtaaactactctg |
40613109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 22 - 210
Target Start/End: Complemental strand, 20542511 - 20542323
Alignment:
| Q |
22 |
aaccatacctcatctttggcatttgtgttcatgcatgattgagccatcagaagcaattcaccatcttcaaattgagcataatttgcattttttccccata |
121 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||| ||||||||||| ||||| ||||||||||||||||| | |||| | || ||||||| | |||||| |
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|
| T |
20542511 |
aaccatacctcatctttggcgtttgtgttcaagcaagattgagccataagaagtaattcaccatcttcaaactcagcaaagttagcattttcttcccata |
20542412 |
T |
|
| Q |
122 |
ggggacattcattctgatagtgtcccagctcgtggcacttataacactcaacagaatctgtgttgattcttcccctaccctttcctcta |
210 |
Q |
| |
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| ||||| |||||||||||||||||||||| ||| ||||| ||||||||||| || ||||||||||||| || ||| |||||||| |
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|
| T |
20542411 |
gaggacactcattctgatagtgtcccagcttgtgacacttgaaacactcaacacttgctttgttgattcttcctctgccccttcctcta |
20542323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 269 - 344
Target Start/End: Complemental strand, 20542288 - 20542213
Alignment:
| Q |
269 |
ccttcaaagcttgctcaagatcaatttcttgattctgagattttatgcgtcgttcttgaacaagtaagctactctg |
344 |
Q |
| |
|
||||||||||||| |||| ||||| ||||||||||||||||| |||||| |||||||||||||||| |||||||| |
|
|
| T |
20542288 |
ccttcaaagcttgttcaacatcaaagtcttgattctgagatttcatgcgttgttcttgaacaagtaaactactctg |
20542213 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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