View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_4 (Length: 497)
Name: NF9533A_low_4
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_4 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 27 - 497
Target Start/End: Original strand, 17700923 - 17701390
Alignment:
| Q |
27 |
agattgggcagtcggtgagtgaataatagtacccttcttcaaaccctttggagtatgccatctcatatgtcccttcaaagcattgttggatgaaaatacc |
126 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
17700923 |
agattgggcagtcggtgagtgaataatagtacccttcttcaaaccctttggagtatgccatctcatatgtcccttcaaagcattgttggataaaaatacc |
17701022 |
T |
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| Q |
127 |
ttgttacaaacatcacatgtatggttcttcggtttcccatcatcatcatgatcatggttgtgaagagaagaagaaaaaacacaactaatttttgtagtct |
226 |
Q |
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| T |
17701023 |
ttgttacaaacatcacatgtatggttcttcggtttcccatc---atcatgatcatggttgtgaagagaagaagaaaaaacacaagtaatttttatagtct |
17701119 |
T |
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| Q |
227 |
tcttcaaggtgccgccattattcacatcatgatcgtggatctgtttgtttgtttcaggttgaacaagaatcttagagaagcggtgaatggttttgtggcc |
326 |
Q |
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| T |
17701120 |
tcttcaaggtgccgccgttattcacatcatgatcatggatctgtttgtttgtttcaggttgaacaagaatcttcgaggagcggtgaatggttttgtggcc |
17701219 |
T |
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| Q |
327 |
accaagtgatttactagaggtgaatgttttgtgacagaactcacaactgtagattcttgaacctgggtttttcttatcattttcaagagattgttggtga |
426 |
Q |
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| T |
17701220 |
accaagtgatttactagaggtgaatgttttgtgacaaaactcacaactgtagattcttgaacctgggtttttcttatcattttcaagagattgttggtga |
17701319 |
T |
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| Q |
427 |
tcataatcatggctgtttttgggtttatcaaaggaatggtgagaagaaggtgaagaatagtgtttgttcat |
497 |
Q |
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| T |
17701320 |
tcatgatcatggctgtttttgggtttatcaaacgaatggtgagaagaaggtgaagaatagtgtttgttcat |
17701390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 27 - 497
Target Start/End: Complemental strand, 17663156 - 17662689
Alignment:
| Q |
27 |
agattgggcagtcggtgagtgaataatagtacccttcttcaaaccctttggagtatgccatctcatatgtcccttcaaagcattgttggatgaaaatacc |
126 |
Q |
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|||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
17663156 |
agatggggcagtcagtgagggaataatagtatccttcttcaaaccctttggagtatgccatctcatatgtcccttcaaagcagtgttggatgaaaatacc |
17663057 |
T |
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| Q |
127 |
ttgttacaaacatcacatgtatggttcttcggtttcccatcatcatcatgatcatggttgtgaagagaagaagaaaaaacacaactaatttttgtagtct |
226 |
Q |
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| T |
17663056 |
ttgtgacaaacatcacttgtatggttcttcggtttccaatcatcat---gatcatggttgtgaagagaagaagaaaaaacacaagtaatttttgtagtct |
17662960 |
T |
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| Q |
227 |
tcttcaaggtgccgccattattcacatcatgatcgtggatctgtttgtttgtttcaggttgaacaagaatcttagagaagcggtgaatggttttgtggcc |
326 |
Q |
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| T |
17662959 |
tcttcaaggtgccgccgttattcacatcatgatcacggatctgtttgtttgtttcaggttgaacaagaatcttagaggagcggtgaatggttttgtggcc |
17662860 |
T |
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| Q |
327 |
accaagtgatttactagaggtgaatgttttgtgacagaactcacaactgtagattcttgaacctgggtttttcttatcattttcaagagattgttggtga |
426 |
Q |
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| T |
17662859 |
accaagtgatttactagaggtgaatgttttgtgacaaaactcacaattgtagattcttgaacctgggtttttcttatcattttcaagagattgttggtga |
17662760 |
T |
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| Q |
427 |
tcataatcatggctgtttttgggtttatcaaaggaatggtgagaagaaggtgaagaatagtgtttgttcat |
497 |
Q |
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| T |
17662759 |
tcatgatcatggctgtttttgggtttatgaaacgaatggtgagaagaaggtgaagaatagggtttgttcat |
17662689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 27 - 206
Target Start/End: Original strand, 21899949 - 21900125
Alignment:
| Q |
27 |
agattgggcagtcggtgagtgaataatagtacccttcttcaaaccctttggagtatgccatctcatatgtcccttcaaagcattgttggatgaaaatacc |
126 |
Q |
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| T |
21899949 |
agatggggcagtcggtgggtggttaataacaccattcttcgaacccttttgagtatgccatctcatatgcccgttcaaagcattgttggacgaaaaaacc |
21900048 |
T |
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| Q |
127 |
ttgttacaaacatcacatgtatggttcttcggtttcccatcatcatcatgatcatggttgtgaagagaagaagaaaaaac |
206 |
Q |
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| T |
21900049 |
ttgttacaaacatcacatgtatggttcttcagtttcc---aatcatcatgattatgattgtgaagagaagaagaaaaaac |
21900125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 446 - 495
Target Start/End: Original strand, 22667771 - 22667820
Alignment:
| Q |
446 |
tgggtttatcaaaggaatggtgagaagaaggtgaagaatagtgtttgttc |
495 |
Q |
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| T |
22667771 |
tgggtttatcaaacgaataatgagaagaaggtgaagaatagtgtttgttc |
22667820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 454
Target Start/End: Original strand, 22667050 - 22667110
Alignment:
| Q |
394 |
tttttcttatcattttcaagagattgttggtgatcataatcatggctgtttttgggtttat |
454 |
Q |
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| T |
22667050 |
tttttcatatcagtttcaagagtctcttggtgatcttgatcatggctgttgttgggtttat |
22667110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 38227577 - 38227637
Alignment:
| Q |
85 |
catctcatatgtcccttcaaagcattgttggatgaaaataccttgttacaaacatcacatg |
145 |
Q |
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| T |
38227577 |
catctcatatgtccattcaatgctttgttagaagtaaaaaccttgttgcaaacatcacatg |
38227637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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