View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_5 (Length: 489)
Name: NF9533A_low_5
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_5 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Original strand, 87364 - 87814
Alignment:
| Q |
1 |
atgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgccagaag |
100 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
87364 |
atgaatatggagtcaaagaagaaattgaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgccagaag |
87463 |
T |
|
| Q |
101 |
ttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcattccatg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
87464 |
ttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcattccatg |
87563 |
T |
|
| Q |
201 |
tagagttgaagctataagatatatggctaatcatgagacggatgaagtctatgcaaaactcaggcttgttcctatgaatattaacgaggttagttttgat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||| |||||||||||||| |
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| T |
87564 |
tagagttgaagctataagatatatggctaatcatgagaccgatgaagtgtatgcaaaactcagacttgtccctatgaatattaaccaggttagttttgat |
87663 |
T |
|
| Q |
301 |
aatgacggtgttgctggcaccaacgtgtctgaaactaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggct |
400 |
Q |
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||||| ||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
87664 |
aatgatggtgttgctggcatcaacgtgtccgaaacaaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggct |
87763 |
T |
|
| Q |
401 |
tttcttgtcctagatattgtgcagaaacgctttttcctcgtttggactatt |
451 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
87764 |
tttcttgtcctagatattgtgcagaaacgctttttcctcgtttggactatt |
87814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 451
Target Start/End: Original strand, 95394 - 95830
Alignment:
| Q |
1 |
atgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgccagaag |
100 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||| |
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| T |
95394 |
atgaatatggagtcaaaaaagaaattgaaaaatgtgaacaagagtgtgg--------------catgccattgcaggaggaatggtgcaaatgccagaag |
95479 |
T |
|
| Q |
101 |
ttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcattccatg |
200 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
95480 |
ttaactcacaggtcttttacttccctcagggtcacgccgagcatgcttgtgagccggtgaatttcagtgcttactccaaaattccatctttcattccatg |
95579 |
T |
|
| Q |
201 |
tagagttgaagctataagatatatggctaatcatgagacggatgaagtctatgcaaaactcaggcttgttcctatgaatattaacgaggttagttttgat |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||| |||||||||||||| |
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| T |
95580 |
tagagttgaagatataagatatatggctaatcatgagaccgatgaagtgtatgcaaaactcagacttgtccctatgaatattaaccaggttagttttgat |
95679 |
T |
|
| Q |
301 |
aatgacggtgttgctggcaccaacgtgtctgaaactaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggct |
400 |
Q |
| |
|
||||| ||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
95680 |
aatgatggtgttgctggcatcaacgtgtccgaaacaaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggct |
95779 |
T |
|
| Q |
401 |
tttcttgtcctagatattgtgcagaaacgctttttcctcgtttggactatt |
451 |
Q |
| |
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||||||||||||||||||||||||||| | ||||||||||| ||||||||| |
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|
| T |
95780 |
tttcttgtcctagatattgtgcagaaatgatttttcctcgtatggactatt |
95830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Complemental strand, 40878919 - 40878469
Alignment:
| Q |
1 |
atgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgccagaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40878919 |
atgaatatggagtcaaagaagaaattgaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgccagaag |
40878820 |
T |
|
| Q |
101 |
ttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcattccatg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40878819 |
ttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcattccatg |
40878720 |
T |
|
| Q |
201 |
tagagttgaagctataagatatatggctaatcatgagacggatgaagtctatgcaaaactcaggcttgttcctatgaatattaacgaggttagttttgat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||| |||||||||||||| |
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|
| T |
40878719 |
tagagttgaagctataagatatatggctaatcatgagaccgatgaagtgtatgcaaaactcagacttgtccctatgaatattaaccaggttagttttgat |
40878620 |
T |
|
| Q |
301 |
aatgacggtgttgctggcaccaacgtgtctgaaactaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggct |
400 |
Q |
| |
|
||||| ||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40878619 |
aatgatggtgttgctggcatcaacgtgtccgaaacaaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggct |
40878520 |
T |
|
| Q |
401 |
tttcttgtcctagatattgtgcagaaacgctttttcctcgtttggactatt |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40878519 |
tttcttgtcctagatattgtgcagaaacgctttttcctcgtttggactatt |
40878469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 451
Target Start/End: Complemental strand, 40870888 - 40870452
Alignment:
| Q |
1 |
atgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgccagaag |
100 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||| |
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|
| T |
40870888 |
atgaatatggagtcaaaaaagaaattgaaaaatgtgaacaagagtgtgg--------------catgccattgcaggaggaatggtgcaaatgccagaag |
40870803 |
T |
|
| Q |
101 |
ttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcattccatg |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||| |
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|
| T |
40870802 |
ttaactcacaggtcttttacttccctcagggtcacgccgagcatgcttgtgagccggtgaatttcagtgcttactccaaaattccatctttcattccatg |
40870703 |
T |
|
| Q |
201 |
tagagttgaagctataagatatatggctaatcatgagacggatgaagtctatgcaaaactcaggcttgttcctatgaatattaacgaggttagttttgat |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||| |||||||||||||| |
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|
| T |
40870702 |
tagagttgaagatataagatatatggctaatcatgagaccgatgaagtgtatgcaaaactcagacttgtccctatgaatattaaccaggttagttttgat |
40870603 |
T |
|
| Q |
301 |
aatgacggtgttgctggcaccaacgtgtctgaaactaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggct |
400 |
Q |
| |
|
||||| ||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40870602 |
aatgatggtgttgctggcatcaacgtgtccgaaacaaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggct |
40870503 |
T |
|
| Q |
401 |
tttcttgtcctagatattgtgcagaaacgctttttcctcgtttggactatt |
451 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||| ||||||||| |
|
|
| T |
40870502 |
tttcttgtcctagatattgtgcagaaatgatttttcctcgtatggactatt |
40870452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 351 - 440
Target Start/End: Complemental strand, 40352777 - 40352688
Alignment:
| Q |
351 |
atcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaacgctttttcctcg |
440 |
Q |
| |
|
||||||||| || || |||||||| |||||||||||||||||||| || || ||| ||||||||| ||||| |||||| |||||||||| |
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|
| T |
40352777 |
atcttttgcaaagactttgacacagtctgatgcaaacaatggtggagggttctctgttcctagatactgtgctgaaacgatttttcctcg |
40352688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 367 - 446
Target Start/End: Original strand, 28346744 - 28346823
Alignment:
| Q |
367 |
ttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaacgctttttcctcgtttgga |
446 |
Q |
| |
|
||||| ||||||||||| ||||||||||| || |||||| |||||| |||||||| || ||| |||| ||||||||||| |
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|
| T |
28346744 |
ttgactcaatctgatgctaacaatggtggaggtttttctgttcctaggtattgtgccgagacgattttccctcgtttgga |
28346823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 451
Target Start/End: Original strand, 42730140 - 42730239
Alignment:
| Q |
352 |
tcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaacgctttttcctcgtttggactatt |
451 |
Q |
| |
|
|||||||| || || || |||||||||||||||||||| ||||| || |||||| ||||||||| ||||| || || |||||||| | ||||| |||| |
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|
| T |
42730140 |
tcttttgcaaagacattaacacaatctgatgcaaacaacggtggaggtttttctgttcctagatactgtgctgagactatttttcctaggttggattatt |
42730239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 405
Target Start/End: Original strand, 21715642 - 21715696
Alignment:
| Q |
351 |
atcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttct |
405 |
Q |
| |
|
||||||||| || || ||||| ||||||||||||||||||||||| || |||||| |
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|
| T |
21715642 |
atcttttgctaagactttgactcaatctgatgcaaacaatggtggggggttttct |
21715696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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