View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_56 (Length: 338)
Name: NF9533A_low_56
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 15 - 333
Target Start/End: Complemental strand, 454061 - 453743
Alignment:
| Q |
15 |
aaaacgattaataacctaaaaatatgataagtgacaaaaattagtgttagtgactaggccccacttattcatagcatttaatttgatgatgctcttcatg |
114 |
Q |
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| T |
454061 |
aaaacgattaataacctaaaaatatgataagtgacaaaaattattgttagtgactaggccccacttattcatagcatttaatttgatgatgctcttcatg |
453962 |
T |
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| Q |
115 |
cactataaataagagtgttgtaagaacattttctttcatccttttctcaagtattgttttgttcagtttactaattaaaaaagatgaagttcaaaccttt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
453961 |
cactataaataagagtgttgtaagaacattttctttcatccttttctcaagtattgttgtgttcagtttactaattaaaaaagatgaagttcaaaccttt |
453862 |
T |
|
| Q |
215 |
tattttgctgatacttctgtctggtgtggttctctctgtagcgagtgcttatgaaaaacaatcacaaagcggaaaggatgaagagcttatggaatatcac |
314 |
Q |
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| T |
453861 |
tattttgctgatacttctgtctggtgtggttctctctgtagggagtgcttatgaaaaaccatcaccaagcggaaaggatgaagagcttatggaatatcac |
453762 |
T |
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| Q |
315 |
aacaaagaatatggtaact |
333 |
Q |
| |
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|| |||||||||||||||| |
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| T |
453761 |
aagaaagaatatggtaact |
453743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 12 - 333
Target Start/End: Complemental strand, 441710 - 441395
Alignment:
| Q |
12 |
atgaaaacgattaataacctaaaaatatgataagt-gacaaaaattagtgttagtgactaggccccacttattcatagcatttaatttgatgatgctctt |
110 |
Q |
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|||||||| ||||||||| | ||||||||||||| ||||||||||||||||| ||| |||| || |||| | |||||||||||||||||||||||||| |
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| T |
441710 |
atgaaaacaattaataacgtgaaaatatgataaggagacaaaaattagtgttaatgagtaggtccaccttacttatagcatttaatttgatgatgctctt |
441611 |
T |
|
| Q |
111 |
catgcactataaataagagtgttgtaagaacattttctttcatccttttctcaagtattgttttgttcagtttactaattaaaaaagatgaagttcaaac |
210 |
Q |
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| T |
441610 |
catgcactataaatatgggtgttgttagagcattttctctcatccttttctcaagta----------ctgttaactaattaacaaagatgaatttcaaac |
441521 |
T |
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| Q |
211 |
cttttattttgctgatacttctgtctggtgtggttctc---tctgtagcgagtgcttatgaaaaacaatcacaaagcggaaaggatgaagagcttatgga |
307 |
Q |
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||||| |||||||||||||||||||||||||||||||| |||| || || ||||||||| | | | ||| |||| |||||||||||||||||||||| |
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| T |
441520 |
cttttgttttgctgatacttctgtctggtgtggttctcatatctgcagtgacggcttatgaagatccaccaccaagcagaaaggatgaagagcttatgga |
441421 |
T |
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| Q |
308 |
atatcacaacaaagaatatggtaact |
333 |
Q |
| |
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| | |||| ||||||||||||||| |
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| T |
441420 |
gtgtgacaagcaagaatatggtaact |
441395 |
T |
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