View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_6 (Length: 484)
Name: NF9533A_low_6
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 49 - 477
Target Start/End: Original strand, 37821240 - 37821678
Alignment:
| Q |
49 |
gaaatgataggagaccaatgacaccaaaaatttaaaactttgtagagtggttagtggaatgcccactaagtggacttttatatacgagtactacggaaga |
148 |
Q |
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| T |
37821240 |
gaaatgataggagaccaatgacaccaaaaatttaaaactttgtagagtggttagtggaatggccactaagtggacttttatatacgagtactacggaaga |
37821339 |
T |
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| Q |
149 |
aattgtgaggccagcagtcacatcacattaccatgagttttggaattgctcttaacatatatcattaataaaatgctatagttatgtatgat-------- |
240 |
Q |
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| T |
37821340 |
aattgtgaggccagcagtcacatcacattaccatgagttttggaattgctcttaacatat--cattattaaaatgctatagttatgtatgataaagggtg |
37821437 |
T |
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| Q |
241 |
----aattatatatgtaagagatgaatagtattacagtaacaaacgttaaaaaacattacattatcaaaataataatcaaataaagaacagtactatggc |
336 |
Q |
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| T |
37821438 |
tgataattatatatgtaagagatgaatagtattacagtatcaaccgttaaaaaacattacattatcaaaataataatcaaataaagaacagtactatggc |
37821537 |
T |
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| Q |
337 |
cagttttggccagtattatagcacatgctaaatcaccaactgaactaaattgacacgcagtaactaggtacagacagatagttgttgtataacatgcata |
436 |
Q |
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| T |
37821538 |
cagttttggccagtattatagcacatgctaaatcaccaactgaactaaattgacacgcagtaactaggtacagacagatagttgttgtataacatgcata |
37821637 |
T |
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| Q |
437 |
atgtcagtctcaagtgcacagaagttaagatgcaacaccaa |
477 |
Q |
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| T |
37821638 |
atgtcagtctcaagtgcacagaagttaagatgcaacaccaa |
37821678 |
T |
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