View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_62 (Length: 327)
Name: NF9533A_low_62
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_62 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 103 - 321
Target Start/End: Original strand, 15262570 - 15262788
Alignment:
| Q |
103 |
taccatggcatcctcaaattcaccatgtgcagcatgcaagtttctacgccgaaaatgtcaaccagaatgtgcatttgcaccttattttccacctgatcag |
202 |
Q |
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| T |
15262570 |
taccatggcatcctcaaattcaccatgtgcagcatgcaagtttctacgccgaaaatgccaaccagaatgtgcatttgcaccttattttccacctgatcag |
15262669 |
T |
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| Q |
203 |
ccacaaaaatttgcaaatgttcatagaatttttggagcaagtaatgttacaaagcttctcaatgatttacaccctcaccaacgtgaagatgctgttaatt |
302 |
Q |
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| T |
15262670 |
ccacaaaaatttgcaaatgttcatagaatttttggagcaagcaatgttacaaagcttctcaatgatttacaccctcaccaacgtgaagatgctgtgaatt |
15262769 |
T |
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| Q |
303 |
cacttgcttatgaagctga |
321 |
Q |
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| T |
15262770 |
cacttgcttatgaagctga |
15262788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 176 - 318
Target Start/End: Original strand, 43583251 - 43583393
Alignment:
| Q |
176 |
tttgcaccttattttccacctgatcagccacaaaaatttgcaaatgttcatagaatttttggagcaagtaatgttacaaagcttctcaatgatttacacc |
275 |
Q |
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| T |
43583251 |
tttgcaccttacttccctccagaagagcctcaaaaatttgcaaacgtgcacaaaatatttggtgctagcaatgtcacaaagcttctcaatgaacttctcc |
43583350 |
T |
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| Q |
276 |
ctcaccaacgtgaagatgctgttaattcacttgcttatgaagc |
318 |
Q |
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| T |
43583351 |
ctcaccaaagggaggatgctgtgaactcccttgcttatgaagc |
43583393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 251
Target Start/End: Original strand, 591118 - 591254
Alignment:
| Q |
115 |
ctcaaattcaccatgtgcagcatgcaagtttctacgccgaaaatgtcaaccagaatgtgca--tttgcaccttattttccacctgatcagccacaaaaat |
212 |
Q |
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| T |
591118 |
ctcaaattctccatgtgctgcttgcaagtttctaagaagaaaatg-caaccaagat-tgcatttttgcaccttatttcccaccagaagagcctcataagt |
591215 |
T |
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| Q |
213 |
ttgcaaatgttcatagaatttttggagcaagtaatgtta |
251 |
Q |
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| T |
591216 |
ttgcaaatgttcacaaaatatttggtgcaagtaatgtta |
591254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 147
Target Start/End: Original strand, 19281994 - 19282025
Alignment:
| Q |
116 |
tcaaattcaccatgtgcagcatgcaagtttct |
147 |
Q |
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| T |
19281994 |
tcaaattcaccatgtgcagcatgcaagtttct |
19282025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 321
Target Start/End: Complemental strand, 12360816 - 12360698
Alignment:
| Q |
203 |
ccacaaaaatttgcaaatgttcatagaatttttggagcaagtaatgttacaaagcttctcaatgatttacaccctcaccaacgtgaagatgctgttaatt |
302 |
Q |
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||||||||||||||||||||||| | ||| ||||| ||||| ||||| | || ||||| ||||| | || || || ||| | |||||||| || || | |
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| T |
12360816 |
ccacaaaaatttgcaaatgttcacaaaatatttggtgcaagcaatgtaagtaaacttctgaatgaagtgcaaccacatcaaagggaagatgcagtgaact |
12360717 |
T |
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| Q |
303 |
cacttgcttatgaagctga |
321 |
Q |
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| T |
12360716 |
ctcttgcttatgaagctga |
12360698 |
T |
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