View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_67 (Length: 317)
Name: NF9533A_low_67
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_67 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 128 - 294
Target Start/End: Original strand, 1744177 - 1744343
Alignment:
| Q |
128 |
tcgaagaatatccatcctcaaactcaaatttcaacaagcctgttgatttcgtgaaactgtctaaagatgatttgattcatagatccaaggtgtcggagca |
227 |
Q |
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| T |
1744177 |
tcgaacaagatccatcctcaaactcaaatctcaacaagcctattgatttcgtgaaactgtctaaagatgatttgattcacagatccaaggtgtcggagca |
1744276 |
T |
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| Q |
228 |
caaatcttttagcactatgcaagttggttcatcatcttgttttccaaataacaacaataaaggaaac |
294 |
Q |
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| T |
1744277 |
caaatcttttagcactatgcaagttggttcatcatcttgttttccaaataacaacaataaaggaaac |
1744343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 137 - 290
Target Start/End: Original strand, 1738843 - 1738996
Alignment:
| Q |
137 |
atccatcctcaaactcaaatttcaacaagcctgttgatttcgtgaaactgtctaaagatgatttgattcatagatccaaggtgtcggagcacaaatcttt |
236 |
Q |
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| T |
1738843 |
atccatcttcaaactctaatttcaacaagcctcttgattttgtgaaactatctaaagaggattcgattcacatgtccaaggtgtcagagcacaaaccttt |
1738942 |
T |
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| Q |
237 |
tagcactatgcaagttggttcatcatcttgttttccaaataacaacaataaagg |
290 |
Q |
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| T |
1738943 |
tagcactatgcaagttggttcatcatctcgttttccaaataacaacaataaagg |
1738996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 284
Target Start/End: Original strand, 1759999 - 1760035
Alignment:
| Q |
248 |
aagttggttcatcatcttgttttccaaataacaacaa |
284 |
Q |
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| T |
1759999 |
aagttggttcatcatctggttttccaaataacaacaa |
1760035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 204
Target Start/End: Original strand, 1724247 - 1724323
Alignment:
| Q |
128 |
tcgaagaatatccatcctcaaactcaaatttcaacaagcctgttgatttcgtgaaactgtctaaagatgatttgatt |
204 |
Q |
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| T |
1724247 |
tcgaacaagatccatcctcaaactcgaattccaacaagcctagtgattatgtgaagctatcaaaagatgattcgatt |
1724323 |
T |
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