View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_7 (Length: 469)
Name: NF9533A_low_7
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 38483858 - 38484303
Alignment:
| Q |
1 |
gcgattattgttggttggaatgatagagcttatccttggcgtgcggtgatggaggaacgcgatttgcaggttctgcttttaactgttgtttttacgtgga |
100 |
Q |
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| T |
38483858 |
gcgattattgttggttggaatgatagagcttatccttggcgtgcggtgatggaggaacgcgatttgcaggttctgcttttaacggttgtttttacatgga |
38483957 |
T |
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| Q |
101 |
gtggtttgaggttttttcaatctttgcttgatatagttatgcaatggaggttggtttcaagggagacgaagttgcttggagttaggatggtgctgaaaag |
200 |
Q |
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| T |
38483958 |
gtggtttgaggttttttcaatctttgcttgatatagttatgcaatggaggttggtttcaagggagacgaagttgcttggagttaggatggtgctgaaaag |
38484057 |
T |
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| Q |
201 |
tatcgttgctgcagggtgggtcgttgttttttcttacttttatacgaagacatggaagcagagaaaccacgacaaagaatggtctgttgaagctaataag |
300 |
Q |
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| T |
38484058 |
tatcgttgctgcagggtgggtcgttgttttttcttacttttatacgaagacatggaagcagagaaaccacgacaaagaatggtctgttgaagctaataag |
38484157 |
T |
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| Q |
301 |
aggttgataatttttcttaaagtttgttttctttttgttattccggagcttattgctttggcactttttatactaccttggattagaaattttatggaga |
400 |
Q |
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| T |
38484158 |
aggttgatagtttttcttaaagtttgttttctttttgttattccggagcttattgctttggcactttttatactaccttggattagaaattttatggaga |
38484257 |
T |
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| Q |
401 |
aaagaaattggaggattatttatatgttcacatggtggtttcagag |
446 |
Q |
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| T |
38484258 |
aaagaaattggaggattatttatatgttcacatggtggtttcagag |
38484303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 91 - 212
Target Start/End: Original strand, 30118347 - 30118468
Alignment:
| Q |
91 |
tttacgtggagtggtttgaggttttttcaatctttgcttgatatagttatgcaatggaggttggtttcaagggagacgaagttgcttggagttaggatgg |
190 |
Q |
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||||| ||||||||| |||||||||| || |||||||||||| | | ||||| | |||||||| || |||||||| ||| |||||||||| |||||| |
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| T |
30118347 |
tttacatggagtggtatgaggtttttgcagtctttgcttgatgtgggcatgcagtataggttggtatcgagggagacaaagatgcttggagtgaggatgt |
30118446 |
T |
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| Q |
191 |
tgctgaaaagtatcgttgctgc |
212 |
Q |
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| T |
30118447 |
ttctgaaatgtattgttgctgc |
30118468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 448
Target Start/End: Original strand, 30118596 - 30118704
Alignment:
| Q |
340 |
attccggagcttattgctttggcactttttatactaccttggattagaaattttatggagaaaagaaattggaggattatttatatgttcacatggtggt |
439 |
Q |
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| T |
30118596 |
attccggaggttctggctttagccctgtttatacttccttggattagaaactttgtggagaatacaaactggaggatcttttacatgctgtcgtggtggt |
30118695 |
T |
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| Q |
440 |
ttcagagca |
448 |
Q |
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| T |
30118696 |
ttcagagca |
30118704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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