View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_72 (Length: 313)
Name: NF9533A_low_72
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_72 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 10 - 307
Target Start/End: Complemental strand, 49075952 - 49075664
Alignment:
| Q |
10 |
aaatgaaccttctacgactttatcgtacatcaagtttctgttaaattaaaagagagatttttctctcttttaatctaatcgagatggttgcaccataaag |
109 |
Q |
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| T |
49075952 |
aaatgaaccttctacgactttatcgtacatccagtttctgttaaattaaaagagagatttttctctcttttaatctaatcgagatggttgcaccataaag |
49075853 |
T |
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| Q |
110 |
ccgattgcagagctcacataaagttatattaaagatgattcaccactagagaggcctaatattgtgtactactaaacattatggattggattttgaggag |
209 |
Q |
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| T |
49075852 |
ccgattgcagagctcatataaagttatattaaagatgattcaccactagagaggcctaatattgtgtactactaaacattatggattggattttgaggag |
49075753 |
T |
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| Q |
210 |
attcagtggtatcgttggaaattttagaggcatcatgagaatcatccgtactaacaggatatccaattccatgtctatgttgtggaaacatcacaaac |
307 |
Q |
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| T |
49075752 |
attca---------ttggaaattttagaggcatcatgagaatcatccgtactaacaggatatccaattccatgtctatgttgtggaaacatcacaaac |
49075664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 179 - 307
Target Start/End: Original strand, 49068262 - 49068381
Alignment:
| Q |
179 |
tactaaacattatggattggattttgaggagattcagtggtatcgttggaaattttagaggcatcatgagaatcatccgtactaacaggatatccaattc |
278 |
Q |
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| T |
49068262 |
tactaaacattatggattggattttgaggagattca---------ttggaaattttagaggcatcatgagaatcatccgtactaacaggatatccaattc |
49068352 |
T |
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| Q |
279 |
catgtctatgttgtggaaacatcacaaac |
307 |
Q |
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| T |
49068353 |
catgtctatgttgtggaaacatcacaaac |
49068381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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