View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9533A_low_75 (Length: 308)
Name: NF9533A_low_75
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_75 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 30049705 - 30049387
Alignment:
| Q |
1 |
actcagcctatgcttagctgatgtcatat----gacataaacctacttaacttgtgcagataatcttact-------------------aacaaaacaag |
77 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30049705 |
actcagcctatgcttagctgatgtcatatatatgacataaacctacttaacttgtgcagataatcttacttgtgcagcatagttttactaacaaaacaag |
30049606 |
T |
|
| Q |
78 |
ttaaaataattacacacataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaactttt |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30049605 |
ttaaaataattacacacataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaactttt |
30049506 |
T |
|
| Q |
178 |
ttgaaatactcccagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgc |
277 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30049505 |
ttgaaatactcctagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgc |
30049406 |
T |
|
| Q |
278 |
agttttacatctccatttt |
296 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
30049405 |
agttttacatctccatttt |
30049387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 7162657 - 7162342
Alignment:
| Q |
1 |
actcagcctatgcttagctgatgtcatatgacataaacctacttaacttgtgcagataatct----------------------tactaacaaaacaagt |
78 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||| |||| |
|
|
| T |
7162657 |
actcagcctatgcttagctgatgtcatatgacataaacctgcttaacttgtgcagataaccttattacttgtgcagcatagttttactaacaaaataagt |
7162558 |
T |
|
| Q |
79 |
taaaataattacacacataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttt |
178 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7162557 |
taaaatgattacacacataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttc |
7162458 |
T |
|
| Q |
179 |
tgaaatactcccagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgca |
278 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7162457 |
tggaatactcccagcttgcttcttagctccatgaacttggcactagcaagtgccttttttaaaatgtctgccaattgttcttcagaactgcagtgctgca |
7162358 |
T |
|
| Q |
279 |
gttttacatctccatt |
294 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
7162357 |
attttacatctccatt |
7162342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 30045302 - 30045121
Alignment:
| Q |
1 |
actcagcctatgcttagctgatgtcatat----gacataaacctacttaacttgtgcagataatcttact-------------------aacaaaacaag |
77 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30045302 |
actcagcctatgcttagctgatgtcatatatatgacataaacctacttaacttgtgcagataatcttacttgtgcagcatagttttactaacaaaacaag |
30045203 |
T |
|
| Q |
78 |
ttaaaataattacacacataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaaca |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30045202 |
ttaaaataattacacacataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaaca |
30045121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 3945959 - 3945641
Alignment:
| Q |
1 |
actcagcctatgcttagctgatgtcatat----gacataaacctacttaacttgtgcagataatcttact-------------------aacaaaacaag |
77 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3945959 |
actcagcctatgcttagctgatgtcatatatatgacataaacctacttaacttgtgcagataatcttacttgtgcagcatagttttactaacaaaacaag |
3945860 |
T |
|
| Q |
78 |
ttaaaataattacacacataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaactttt |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945859 |
ttaaaataattacacacataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaactttt |
3945760 |
T |
|
| Q |
178 |
ttgaaatactcccagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgc |
277 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945759 |
ttgaaatactcctagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgc |
3945660 |
T |
|
| Q |
278 |
agttttacatctccatttt |
296 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
3945659 |
agttttacatctccatttt |
3945641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 3941560 - 3941377
Alignment:
| Q |
1 |
actcagcctatgcttagctgatgtcatat----gacataaacctacttaacttgtgcagataatcttact-------------------aacaaaacaag |
77 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3941560 |
actcagcctatgcttagctgatgtcatatatatgacataaacctacttaacttgtgcagataatcttacttgtgcagcatagttttactaacaaaacaag |
3941461 |
T |
|
| Q |
78 |
ttaaaataattacacacataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacact |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3941460 |
ttaaaataattacacacataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacact |
3941377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 22365583 - 22365271
Alignment:
| Q |
1 |
actcagcctatgcttagctgatgtcatatgacataaacctacttaacttgtgcagataatcttact-------------------aacaaaacaagttaa |
81 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
22365583 |
actcagcctatgcttagttgatgtcatatgacataaacctacttaacttgtgcagataaccttacttatgcagcatagttttactaacaaaacaagttaa |
22365484 |
T |
|
| Q |
82 |
aataattacacacataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttga |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
22365483 |
aataattacacacataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttatctgg |
22365384 |
T |
|
| Q |
182 |
aatactcccagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagtt |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
22365383 |
aatactcccagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcaatt |
22365284 |
T |
|
| Q |
282 |
ttacatctccatt |
294 |
Q |
| |
|
||||||||||||| |
|
|
| T |
22365283 |
ttacatctccatt |
22365271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 22361196 - 22361019
Alignment:
| Q |
1 |
actcagcctatgcttagctgatgtcatatgacataaacctacttaacttgtgcagataatcttact-------------------aacaaaacaagttaa |
81 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
22361196 |
actcagcctatgcttagctgatgtcatatgacataaacctacttaacttgtgcagataaccttacttgtgcagcatagctttactaacaaaacaagttaa |
22361097 |
T |
|
| Q |
82 |
aataattacacacataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaaca |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22361096 |
aataattacacacataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaaca |
22361019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 140
Target Start/End: Original strand, 23397337 - 23397404
Alignment:
| Q |
75 |
aagttaaaataattacacaca--taagcaataaagtaacataaacaataaagtattcagaaaagtttt |
140 |
Q |
| |
|
|||||||||| |||||||||| || ||||||||||||||| ||||| || |||||||||||||||| |
|
|
| T |
23397337 |
aagttaaaatcattacacacacataggcaataaagtaacattaacaacgaaatattcagaaaagtttt |
23397404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 39949477 - 39949789
Alignment:
| Q |
1 |
actcagcctatgcttagctgatgtcatatgacataaacctacttaacttg----------------tgcag-ataatcttactaacaaaacaagttaaaa |
83 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||| | |||||||||||||||||||||| |
|
|
| T |
39949477 |
actcagcctatgtttagctgatgtcatatgacataaacctacttaacttgcagataaccttacttgtgcagcatagttttactaacaaaacaagttaaaa |
39949576 |
T |
|
| Q |
84 |
taattacacacataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaa |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
39949577 |
taattacacacataagcaataaagtaacataaacaataaagtataaagaaaagttttataggtcaattagtcaacactcctccttaaaacttttctggaa |
39949676 |
T |
|
| Q |
184 |
tactcccagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagtttt |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39949677 |
tactcccagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagtttt |
39949776 |
T |
|
| Q |
284 |
acatctccatttt |
296 |
Q |
| |
|
||||||||||||| |
|
|
| T |
39949777 |
acatctccatttt |
39949789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 46 - 160
Target Start/End: Original strand, 39953930 - 39954045
Alignment:
| Q |
46 |
acttgtgcag-ataatcttactaacaaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtattcagaaaagttttatag |
144 |
Q |
| |
|
|||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39953930 |
acttgtgcagcatagttttactaacaaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtataaagaaaagttttatag |
39954029 |
T |
|
| Q |
145 |
gtcaattagtcaacac |
160 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
39954030 |
gtcaattagtcaacac |
39954045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 39953869 - 39953918
Alignment:
| Q |
1 |
actcagcctatgcttagctgatgtcatatgacataaacctacttaacttg |
50 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39953869 |
actcagtctatgtttagctgatgtcatatgacataaacctacttaacttg |
39953918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 196325 - 196628
Alignment:
| Q |
1 |
actcagcctatgcttagctgatgtcatatgacataaacctacttaacttgtgcagataatcttact-------------------aacaaaacaagttaa |
81 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||| ||||||||||||||| |
|
|
| T |
196325 |
actcagcctatgcttagctgatgtcatatgacgtaaacctacttaactcgtgcagataaccttacttgtgcagcatagttttactaacaaaacaagttaa |
196424 |
T |
|
| Q |
82 |
aataattacacacataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttga |
181 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
196425 |
aatgattacacacataaacaataaagtaacataa-----------ttcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttga |
196513 |
T |
|
| Q |
182 |
aatactcccagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagtt |
281 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
196514 |
aatactcctagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagtt |
196613 |
T |
|
| Q |
282 |
ttacatctccatttt |
296 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
196614 |
ttacatctccatttt |
196628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 200704 - 200872
Alignment:
| Q |
1 |
actcagcctatgcttagctgatgtcatatgacataaacctacttaacttgtgcagataa-------------------tcttactaacaaaacaagttaa |
81 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
200704 |
actcagcctatgcttagctgatgtcatatgaggtaaacctacttaacttgtgcagataaccttacttgtgcagcatagttttactaacaaaacaagttaa |
200803 |
T |
|
| Q |
82 |
aataattacacacataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacact |
161 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
200804 |
aatgattacacacataaacaataaagtaacata-----------attcagaaaagttttataggtcaattagtcaacact |
200872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 1330746 - 1330569
Alignment:
| Q |
1 |
actcagcctatgcttagctgatgtcatatgacataaacctacttaacttgtgcagataa-------------------tcttactaacaaaacaagttaa |
81 |
Q |
| |
|
||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
1330746 |
actcaacctatactttgctgatgtcatatgacataaacctacttaacttgtgcagataacattacttgtgcagtatagttttactaacaaaacaagttaa |
1330647 |
T |
|
| Q |
82 |
aataattacacacataagcaataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaaca |
159 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1330646 |
aatgattacacacataagcaatagagtaacataaacaataaagtattcagacaagttttataggtcaattagtcaaca |
1330569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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