View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_80 (Length: 298)
Name: NF9533A_low_80
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_80 |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 13385197 - 13384878
Alignment:
| Q |
1 |
atttctttgttattagtgttgttcttcttcttttgcttttagggtttcattccctggtattgttcttcgacctgttgggaatttcaggagcaattatgat |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
13385197 |
atttctttgttattagtgttgttgttcttcttttgcttttagggtttcattccctagtattgttcttcgacatgttgggaatttcaggagcagttatgat |
13385098 |
T |
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| Q |
101 |
tatcattaccaaaccctaaaagataatgttgatatgtt----------------------gaagcttgttcaattgtatctagtaatttaattttagaga |
178 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| ||||||||||| || | |||||| ||||||||||| |
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| T |
13385097 |
tatcattaccaaaccctaaaagataatgttgatatgttttgaagcttgttgaattatgttgaagtttgttcaattgcatatggtaattcaattttagaga |
13384998 |
T |
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| Q |
179 |
atttaacgttaatgaggatgtttttgcaaacgattcaattgagcttttgagacaaagtggaattgatttcaggaagaataatcaagatggtatcgatgct |
278 |
Q |
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|||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
13384997 |
atttaatgttaatgaggatgttttcgcaaatgattcaattgagcttttgagacaaagtggaattgatttcaagaagaataatcaagatggtatcgatgct |
13384898 |
T |
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| Q |
279 |
aggcgtttcggtgagctttt |
298 |
Q |
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| T |
13384897 |
aggcgtttcggtgagctttt |
13384878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 94 - 298
Target Start/End: Original strand, 35716687 - 35716890
Alignment:
| Q |
94 |
ttatgattatcattaccaaaccctaaaagataatgttgatatgttgaagcttgttcaattgtatctagtaatttaattttagagaatttaacgttaatga |
193 |
Q |
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| T |
35716687 |
ttatgattatcattaccaaaccctaaaagataatgttgatatgttgaagcttgttcaattgtacctggtaattcaagtttagagaatttaatgttaatga |
35716786 |
T |
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| Q |
194 |
ggatgtttttgcaaacgattcaattgagcttttgagacaaagtggaattgatttcaggaagaataatcaagatggtatcgatgctaggcgtttcggtgag |
293 |
Q |
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||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| || |||||||||| |
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| T |
35716787 |
ggatgcttttgcaaatgattcaattgagcttttgagacaaagtggaattgatttcaagaagaataa-aaagatggtatcgatgcttggtgtttcggtgac |
35716885 |
T |
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| Q |
294 |
ctttt |
298 |
Q |
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||||| |
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| T |
35716886 |
ctttt |
35716890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 35712997 - 35713090
Alignment:
| Q |
1 |
atttctttgttattagtgttgttcttcttcttttgcttttagggtttcattccctggtattgttcttcgacctgttgggaatttcaggagcaat |
94 |
Q |
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| T |
35712997 |
atttctttgttattagtgttgttgttcttcttttgcttttagggtttcattccctggtattgttcttcgacctgttgggaatttcaggagcaat |
35713090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 152 - 298
Target Start/End: Complemental strand, 816969 - 816823
Alignment:
| Q |
152 |
ttgtatctagtaatttaattttagagaatttaacgttaatgaggatgtttttgcaaacgattcaattgagcttttgagacaaagtggaattgatttcagg |
251 |
Q |
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|||||||| | |||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
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| T |
816969 |
ttgtatctggcaattcaattttagagaatttaatgttaacgaggatgtttttgcaaatgattcaattgagcttttgagacaaagtggaattgatttcaag |
816870 |
T |
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| Q |
252 |
aagaataatcaagatggtatcgatgctaggcgtttcggtgagctttt |
298 |
Q |
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| T |
816869 |
aagaataatgaagatggtatcgatgctaggcgtttcggtgagctttt |
816823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 49 - 154
Target Start/End: Complemental strand, 817134 - 817029
Alignment:
| Q |
49 |
attccctggtattgttcttcgacctgttgggaatttcaggagcaattatgattatcattaccaaaccctaaaagataatgttgatatgttgaagcttgtt |
148 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
817134 |
attccctggtattgttcttcgacctgttgggaatttcaagagcaattatgattatcattaccaaaccctaaaagataatgttgatatgttaaagcttatt |
817035 |
T |
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| Q |
149 |
caattg |
154 |
Q |
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|||||| |
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| T |
817034 |
caattg |
817029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 23485595 - 23485628
Alignment:
| Q |
17 |
tgttgttcttcttcttttgcttttagggtttcat |
50 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
23485595 |
tgttgttcttcttcttttgcttttagggtttcat |
23485628 |
T |
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