View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_81 (Length: 298)
Name: NF9533A_low_81
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_81 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 55075419 - 55075128
Alignment:
| Q |
1 |
aatattttagaaaccacacaaaattactaatatcaattaaaattccaaacaacagaagactaatctagctggatagagtagaggttagcatcttcatgtg |
100 |
Q |
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| T |
55075419 |
aatattttagaaaccacacaaaattactaatatcaattaaaatttcaaacaacagaagactaatctagctggatagagtagaggttagcatcttcatgtg |
55075320 |
T |
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| Q |
101 |
aagagaggatatcatgatatcacagggccctttatcttacaatgtgttgtcttgatgagaggatttgtggggagagataacatggactttcatgtgccaa |
200 |
Q |
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| T |
55075319 |
aagagaggatatcatgatatcacagggccctttatcttacaatgtgttgtcttgatgagatgatttgtggggagagataacatggactttcatgtgccaa |
55075220 |
T |
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| Q |
201 |
gtgaaaggttaagtcacaatcaactttaaagattatcccttgggttgaaaaacagaaaaatttggtggccttttccatctcttccaccaagc |
292 |
Q |
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| T |
55075219 |
gtgaaaggttaagtcacaatcaactttaaagattatcccttgggttgaaaaacagaaaaatttgttggccttttccatctcttccaccaagc |
55075128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 226
Target Start/End: Original strand, 50371212 - 50371291
Alignment:
| Q |
147 |
ttgtcttgatgagaggatttgtggggagaga-taacatggactttcatgtgccaagtgaaaggttaagtcacaatcaactt |
226 |
Q |
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| T |
50371212 |
ttgtcttgatgagaagaattgtggggagagagtaacatggt-tttcatgtgccaaatgaaaggtaaagtcaccatcaactt |
50371291 |
T |
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