View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9533A_low_82 (Length: 297)

Name: NF9533A_low_82
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9533A_low_82
NF9533A_low_82
[»] chr8 (12 HSPs)
chr8 (23-284)||(17822129-17822390)
chr8 (50-284)||(17779867-17780101)
chr8 (23-284)||(17800820-17801081)
chr8 (23-284)||(17691604-17691865)
chr8 (61-286)||(17717311-17717533)
chr8 (23-284)||(17868845-17869103)
chr8 (23-284)||(17813254-17813515)
chr8 (23-232)||(17851822-17852028)
chr8 (59-284)||(17920614-17920836)
chr8 (23-232)||(17817443-17817649)
chr8 (23-232)||(17843307-17843513)
chr8 (155-284)||(17789075-17789209)


Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 23 - 284
Target Start/End: Original strand, 17822129 - 17822390
Alignment:
Q  23 aagatgagcatccatgtctctagtgcttttggcaaagtagtccatatagccatttggaggatcaatatcctcattgattttctcatattcaatagtccat 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17822129 aagatgagcatccatgtctctagtgcttttggcaaagtagtccatatagccatttggaggatcaatatcctcattgattttctcatattcaatagtccat 17822228  T
Q  123 ttaacagaagcacttccaccagacttatcaattacttcaaggatgagcttaaagaccttatagtgttcatcaatatctccaccaaagagcttgaaagtga 222  Q
    ||||||| |||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17822229 ttaacagcagcatttccaccagctttatcaattacttcaaggatgagcttaaagaccttatagtgttcatcaatatctccaccaaagagcttgaaagtga 17822328  T
Q  223 ttttcttgttttgtttatcaagatcttcaataatctcatgacatgtgtgtactttgccatct 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17822329 ttttcttgttttgtttatcaagatcttcaataatctcatgacatgtgtgtactttgccatct 17822390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 50 - 284
Target Start/End: Original strand, 17779867 - 17780101
Alignment:
Q  50 tttggcaaagtagtccatatagccatttggaggatcaatatcctcattgattttctcatattcaatagtccatttaacagaagcacttccaccagactta 149  Q
    |||| ||||||| ||||| |||||||||||||| ||||| ||||||||||| |||||||||||||  |||||||||   | |||| | ||| ||  ||||    
T  17779867 tttgccaaagtattccatgtagccatttggagggtcaatgtcctcattgatcttctcatattcaactgtccatttagatgcagcagtgccatcaccctta 17779966  T
Q  150 tcaattacttcaaggatgagcttaaagaccttatagtgttcatcaatatctccaccaaagagcttgaaagtgattttcttgttttgtttatcaagatctt 249  Q
    ||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||| ||||| |||| |||||  ||||    
T  17779967 tcaattacttcaaggataagcttaaagaccttgtagtgctcatcaatatctccaccaaagagcttgaaaatgatttttttgttctgttcatcaacttctt 17780066  T
Q  250 caataatctcatgacatgtgtgtactttgccatct 284  Q
    ||| | ||||||||||||||||||| |||||||||    
T  17780067 caagactctcatgacatgtgtgtaccttgccatct 17780101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 23 - 284
Target Start/End: Original strand, 17800820 - 17801081
Alignment:
Q  23 aagatgagcatccatgtctctagtgcttttggcaaagtagtccatatagccatttggaggatcaatatcctcattgattttctcatattcaatagtccat 122  Q
    |||||||||||| || |||||||| | ||||   ||||| |||||  ||||||||||||| ||||||||||| ||||| ||| ||||||||| |||||||    
T  17800820 aagatgagcatcaatatctctagtacatttgcataagtaatccatccagccatttggagggtcaatatcctcgttgatcttcacatattcaacagtccat 17800919  T
Q  123 ttaacagaagcacttccaccagacttatcaattacttcaaggatgagcttaaagaccttatagtgttcatcaatatctccaccaaagagcttgaaagtga 222  Q
    ||||| | || | | ||| ||  ||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||     
T  17800920 ttaactgcagaagtcccatcacccttatcaattacttcaatgatgagcttaaagtccttatagtgctcatcaatatctccaccaaagagcttgtaagtgc 17801019  T
Q  223 ttttcttgttttgtttatcaagatcttcaataatctcatgacatgtgtgtactttgccatct 284  Q
     ||||||||||| || |||||  |||||||   ||||||||||||||||||| || ||||||    
T  17801020 ctttcttgtttttttcatcaatttcttcaaccttctcatgacatgtgtgtaccttaccatct 17801081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 23 - 284
Target Start/End: Original strand, 17691604 - 17691865
Alignment:
Q  23 aagatgagcatccatgtctctagtgcttttggcaaagtagtccatatagccatttggaggatcaatatcctcattgattttctcatattcaatagtccat 122  Q
    |||||||||||| ||||||| ||||| ||||  || ||| |||||  | | ||||||||| ||||||||||||||||| ||||||||||||| |||||||    
T  17691604 aagatgagcatcaatgtctcgagtgcatttgctaaggtattccatccaactatttggaggttcaatatcctcattgatcttctcatattcaacagtccat 17691703  T
Q  123 ttaacagaagcacttccaccagacttatcaattacttcaaggatgagcttaaagaccttatagtgttcatcaatatctccaccaaagagcttgaaagtga 222  Q
    |||||||||| | | ||| ||| ||||||||||||||||| ||||||||||||||||||||| || |||||||| ||| ||||||||| ||||  |  ||    
T  17691704 ttaacagaagtagtgccatcagccttatcaattacttcaatgatgagcttaaagaccttatattgctcatcaatttcttcaccaaagatcttgtgaacga 17691803  T
Q  223 ttttcttgttttgtttatcaagatcttcaataatctcatgacatgtgtgtactttgccatct 284  Q
    |||| ||||| | || |||||  ||||||| | | ||||||||||||| ||| || ||||||    
T  17691804 tttttttgttcttttcatcaatttcttcaaaactttcatgacatgtgtataccttaccatct 17691865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 61 - 286
Target Start/End: Original strand, 17717311 - 17717533
Alignment:
Q  61 agtccatatagccatttggaggatcaatatcctcattgattttctcatattcaatagtccatttaacagaagcacttccaccagacttatcaattacttc 160  Q
    |||||||  |||||||||| || ||||||||||||||||| |||| |||||||| |||||||||  |||   || | ||| ||   |||||||||||||     
T  17717311 agtccatccagccatttggtgggtcaatatcctcattgatcttctgatattcaacagtccattttgcagctccagtgccatcaccattatcaattacttg 17717410  T
Q  161 aaggatgagcttaaagaccttatagtgttcatcaatatctccaccaaagagcttgaaagtgattttcttgttttgtttatcaagatcttcaataatctca 260  Q
    || ||| |  ||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| ||||| |||| |||||   |||| ||| |||||    
T  17717411 aatgatcaaattaaagaccttatagtgctcatcaatgtctccaccgaagagcttgaaagtgatttttttgttctgttcatcaa---cttcgatactctca 17717507  T
Q  261 tgacatgtgtgtactttgccatctat 286  Q
    |||||||||||||| || ||||||||    
T  17717508 tgacatgtgtgtaccttaccatctat 17717533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 23 - 284
Target Start/End: Original strand, 17868845 - 17869103
Alignment:
Q  23 aagatgagcatccatgtctctagtgcttttggcaaagtagtccatatagccatttggaggatcaatatcctcattgattttctcatattcaatagtccat 122  Q
    ||||||| |||| || |||||||||||||||  || ||| |||||  | |||||||||| |||||||||||||||  | |||||||| |||||| |||||    
T  17868845 aagatgaccatcaatatctctagtgcttttgctaaggtaatccatccaaccatttggagtatcaatatcctcattattcttctcataatcaatactccat 17868944  T
Q  123 ttaacagaagcacttccaccagacttatcaattacttcaaggatgagcttaaagaccttatagtgttcatcaatatctccaccaaagagcttgaaagtga 222  Q
     |||||| || ||||||| ||| ||| | ||  ||||| | |||||||||||| |||||||||| |   ||||||||||||||||| |||||| ||||||    
T  17868945 ctaacagcagaacttccatcagccttgttaagcacttctaagatgagcttaaataccttatagttt---tcaatatctccaccaaacagcttgtaagtga 17869041  T
Q  223 ttttcttgttttgtttatcaagatcttcaataatctcatgacatgtgtgtactttgccatct 284  Q
    |||| ||||| || | |||||  ||||||| | ||||||  ||||||||||| | |||||||    
T  17869042 tttttttgttctgatcatcaacttcttcaacactctcattgcatgtgtgtacctcgccatct 17869103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 23 - 284
Target Start/End: Original strand, 17813254 - 17813515
Alignment:
Q  23 aagatgagcatccatgtctctagtgcttttggcaaagtagtccatatagccatttggaggatcaatatcctcattgattttctcatattcaatagtccat 122  Q
    |||||||||||| || ||||||||   ||| |||| |||||||||  ||||||| ||||  ||||||||||||||||| ||| |||||||||||||||||    
T  17813254 aagatgagcatcaatatctctagtaagtttagcaacgtagtccatccagccattaggagcgtcaatatcctcattgatcttcacatattcaatagtccat 17813353  T
Q  123 ttaacagaagcacttccaccagacttatcaattacttcaaggatgagcttaaagaccttatagtgttcatcaatatctccaccaaagagcttgaaagtga 222  Q
    ||||  | |||||| |   ||   |||||||||| |||||  ||||| |||||  |||||||||  ||| ||||||||||||| ||||||||| || |||    
T  17813354 ttaatggcagcactactgtcacttttatcaattatttcaataatgagtttaaaatccttatagttctcaccaatatctccaccgaagagcttgtaactga 17813453  T
Q  223 ttttcttgttttgtttatcaagatcttcaataatctcatgacatgtgtgtactttgccatct 284  Q
     ||| || || | || |||||  ||||||| | ||||||||||||||||||| |||||||||    
T  17813454 gttttttattcttttcatcaacttcttcaacactctcatgacatgtgtgtaccttgccatct 17813515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 23 - 232
Target Start/End: Original strand, 17851822 - 17852028
Alignment:
Q  23 aagatgagcatccatgtctctagtgcttttggcaaagtagtccatatagccatttggaggatcaatatcctcattgattttctcatattcaatagtccat 122  Q
    ||||||| |||| || |||||||||||||||  || |||||||||  | |||||||||| ||||| || ||||||| | |||||||| ||||||||||||    
T  17851822 aagatgaccatcaatatctctagtgcttttgctaaggtagtccatccaaccatttggagtatcaacattctcattgttcttctcataatcaatagtccat 17851921  T
Q  123 ttaacagaagcacttccaccagacttatcaattacttcaaggatgagcttaaagaccttatagtgttcatcaatatctccaccaaagagcttgaaagtga 222  Q
     ||| || || | |||||  |  |||   ||| ||||| | ||||||||||||||||||||||| ||||   |||||||||||||| |||||||||||||    
T  17851922 ctaagagcagaagttccattatccttgataatcacttctaagatgagcttaaagaccttatagttttca---atatctccaccaaaaagcttgaaagtga 17852018  T
Q  223 ttttcttgtt 232  Q
    |||| |||||    
T  17852019 tttttttgtt 17852028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 59 - 284
Target Start/End: Original strand, 17920614 - 17920836
Alignment:
Q  59 gtagtccatatagccatttggaggatcaatatcctcattgattttctcatattcaatagtccatttaacagaagcacttccaccagacttatcaattact 158  Q
    |||||||||  ||||||||||||  ||||  ||||||||| | |||||||| |||||||||||| |||||| || ||||||| | | ||| | ||  |||    
T  17920614 gtagtccatccagccatttggagtctcaacttcctcattgttcttctcataatcaatagtccatctaacagcagaacttccatctgccttgttaagcact 17920713  T
Q  159 tcaaggatgagcttaaagaccttatagtgttcatcaatatctccaccaaagagcttgaaagtgattttcttgttttgtttatcaagatcttcaataatct 258  Q
    || | |||||||||||||||||| |||| |   ||||||||||||||||| ||||||||||||||||| ||||| || | |||||  |||||||    ||    
T  17920714 tctaagatgagcttaaagaccttgtagttt---tcaatatctccaccaaacagcttgaaagtgatttttttgttctgctcatcaacttcttcaacctgct 17920810  T
Q  259 catgacatgtgtgtactttgccatct 284  Q
    |||  ||||||||||| |||||||||    
T  17920811 cattgcatgtgtgtaccttgccatct 17920836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 232
Target Start/End: Original strand, 17817443 - 17817649
Alignment:
Q  23 aagatgagcatccatgtctctagtgcttttggcaaagtagtccatatagccatttggaggatcaatatcctcattgattttctcatattcaatagtccat 122  Q
    ||||||| |||| || |||||||||| ||||  || |||||||||  ||||||| |||| |||||||||||||||  | |||||||| ||||||||||||    
T  17817443 aagatgaccatcaatatctctagtgcatttgctaaggtagtccatccagccattgggagtatcaatatcctcatttttcttctcataatcaatagtccat 17817542  T
Q  123 ttaacagaagcacttccaccagacttatcaattacttcaaggatgagcttaaagaccttatagtgttcatcaatatctccaccaaagagcttgaaagtga 222  Q
     |||||| || |||||||  |  |||   ||| ||||| | ||| |  |||||||||||||||| |   ||||||||||||||||| |||||||||||||    
T  17817543 ctaacagcagaacttccattatccttgataatcacttctaagataacgttaaagaccttatagttt---tcaatatctccaccaaacagcttgaaagtga 17817639  T
Q  223 ttttcttgtt 232  Q
    |||| |||||    
T  17817640 tttttttgtt 17817649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 232
Target Start/End: Original strand, 17843307 - 17843513
Alignment:
Q  23 aagatgagcatccatgtctctagtgcttttggcaaagtagtccatatagccatttggaggatcaatatcctcattgattttctcatattcaatagtccat 122  Q
    ||||||| |||| || |||||||||| ||||  || |||||||||  ||||||| |||| |||||||||||||||  | ||||||||  |||||||||||    
T  17843307 aagatgaccatcaatatctctagtgcatttgctaaggtagtccatccagccattgggagtatcaatatcctcatttttcttctcataaccaatagtccat 17843406  T
Q  123 ttaacagaagcacttccaccagacttatcaattacttcaaggatgagcttaaagaccttatagtgttcatcaatatctccaccaaagagcttgaaagtga 222  Q
     |||||| || |||||||  |  |||   ||| ||||| | ||| |  |||||||||||||||| |   ||||||||||||||||| |||||||||||||    
T  17843407 ctaacagcagaacttccattatccttgataatcacttctaagataacgttaaagaccttatagttt---tcaatatctccaccaaacagcttgaaagtga 17843503  T
Q  223 ttttcttgtt 232  Q
    |||| |||||    
T  17843504 tttttttgtt 17843513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 155 - 284
Target Start/End: Original strand, 17789075 - 17789209
Alignment:
Q  155 tacttcaaggatgagcttaaagaccttatagtgttcatcaatatctcc----accaaagagcttgaaagtg-attttcttgttttgtttatcaagatctt 249  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||    ||||||||||||  |||||  |||| || ||  ||| |||||  ||||    
T  17789075 tacttcaagaatgagcttaaagaccttatagtgctcatcaatatctccaccaaccaaagagcttataagtgtttttttttattcagttcatcaacttctt 17789174  T
Q  250 caataatctcatgacatgtgtgtactttgccatct 284  Q
    ||| | ||||||||||||||||||| |||||||||    
T  17789175 caacactctcatgacatgtgtgtaccttgccatct 17789209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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