View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_85 (Length: 296)
Name: NF9533A_low_85
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_85 |
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| [»] chr3 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 13 - 296
Target Start/End: Original strand, 46239894 - 46240177
Alignment:
| Q |
13 |
gacatcatggagtccatgaggacgaatcatgcagtgggtatcaccaaaggtagggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgatg |
112 |
Q |
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| T |
46239894 |
gacatcatggatgacatgaggacgaatcatgcagtgggtatcaccaaaggtagggcgtggaaagctaaacagatagctcagaaaattgttgagggtgatg |
46239993 |
T |
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| Q |
113 |
ctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaacagggtgagtatcactgttgataggccagatccagg |
212 |
Q |
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| T |
46239994 |
ctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaatagtgtgagtatcaatgttgataggccagatccagg |
46240093 |
T |
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| Q |
213 |
attacaacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggcttacaaatggatgtaggccatttattgg |
296 |
Q |
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| T |
46240094 |
attacaacccaggtttggatctttttacttttgttttgatggttgcaaaaaagggtttacaaatggatgtaggccatttattgg |
46240177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 266
Target Start/End: Original strand, 23541302 - 23541541
Alignment:
| Q |
27 |
catgaggacgaatcatgcagtgggtatcaccaaaggtagggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgatgctgattgtcaatac |
126 |
Q |
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| T |
23541302 |
catgaggacaaaccatgcagtgggtattacaatgggtagggcttggaaggcaaaacagattgctcagagtattgttgatggtgatgctgataggcaatat |
23541401 |
T |
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| Q |
127 |
tcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaacagggtgagtatcactgttgataggccagatccaggattacaacccaggt |
226 |
Q |
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| T |
23541402 |
gccatgatttggaggtatgctgcagaacttaaaagggtgaatgctggaaataatgtgaagataaatgtggatagaccaaccccatcaatccaacccaggt |
23541501 |
T |
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| Q |
227 |
ttggatctttttacttttgttttgatggctgcaaaaaagg |
266 |
Q |
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| T |
23541502 |
ttggttctttctacttttgttttgatggctgtaagaaagg |
23541541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 61 - 296
Target Start/End: Complemental strand, 3437537 - 3437302
Alignment:
| Q |
61 |
ggtagggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgatgctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaa |
160 |
Q |
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| T |
3437537 |
ggtagggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgatgctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaa |
3437438 |
T |
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| Q |
161 |
gagtgtgtcctggaaacagggtgagtatcactgttgataggccagatccaggattacaacccaggtttggatctttttacttttgttttgatggctgcaa |
260 |
Q |
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| T |
3437437 |
gagtgtgtcctggaaacagtgtgagtatcaatgttgataggccagatccaggattacaacccaggtttggatctttttacttttgttttgatggatgcaa |
3437338 |
T |
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| Q |
261 |
aaaagggcttacaaatggatgtaggccatttattgg |
296 |
Q |
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| T |
3437337 |
aaaagggtttacaaatggatgtaggccatttattgg |
3437302 |
T |
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