View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_88 (Length: 295)
Name: NF9533A_low_88
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_88 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 20 - 295
Target Start/End: Complemental strand, 37902822 - 37902547
Alignment:
| Q |
20 |
acatcaccaactccccaggtattttgcattttatttatcaaatgggctcatcatatctagtttggttttttgttcttcacttgttgaagcatttgttcca |
119 |
Q |
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| T |
37902822 |
acatcaccaactccccaggtattttgcattttatttatcaaatgggctcatcatatctagtttggttttttgttcttcacttgttgaagcatttgttcca |
37902723 |
T |
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| Q |
120 |
agttatcataattgcacaattcaattgaagtttgaacttcttgtctttgaaactgagttgttcatattctattttctatatattacggggatgaaaatgg |
219 |
Q |
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| T |
37902722 |
agttatcataattgcacaattcaattgaagtttgaacttcttgtctttgaaactgagttgttcatattctattttctatatattacggggatgaaaatgg |
37902623 |
T |
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| Q |
220 |
aaaatgagatctttgttttgtgttgtatgcaggtttacttgggtgagcaatatgtaaacaatcctaaactttctga |
295 |
Q |
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| T |
37902622 |
aaaatgagatctttgttttgtgttgtatgcaggtttacttgggtgagcaatacgtaaacaatcctaaactttctga |
37902547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 20 - 295
Target Start/End: Complemental strand, 37909333 - 37909058
Alignment:
| Q |
20 |
acatcaccaactccccaggtattttgcattttatttatcaaatgggctcatcatatctagtttggttttttgttcttcacttgttgaagcatttgttcca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37909333 |
acatcaccaactccccaggtattttgcattttatttatcaaatgggctcatcatatctagtttggttttttgttcttcacttgttgaagcatttgttcca |
37909234 |
T |
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| Q |
120 |
agttatcataattgcacaattcaattgaagtttgaacttcttgtctttgaaactgagttgttcatattctattttctatatattacggggatgaaaatgg |
219 |
Q |
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| T |
37909233 |
agttatcataattgcacaattcaattgaagtttgaacttcttgtctttgaaactgagttgttcatattctattttctatatattacggggatgaaaatgg |
37909134 |
T |
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| Q |
220 |
aaaatgagatctttgttttgtgttgtatgcaggtttacttgggtgagcaatatgtaaacaatcctaaactttctga |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37909133 |
aaaatgagatctttgttttgtgttgtatgcaggtttacttgggtgagcaatacgtaaacaatcctaaactttctga |
37909058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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