View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533A_low_97 (Length: 288)
Name: NF9533A_low_97
Description: NF9533A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533A_low_97 |
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Alignment Details
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 100 - 190
Target Start/End: Original strand, 18786995 - 18787085
Alignment:
| Q |
100 |
agcagcgacggcattggagggatcataagtctttgccacgagtgtgttgagaacaacaaacaagaagatattgtattgtatgctattaaac |
190 |
Q |
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| T |
18786995 |
agcagcgacggcattggagggatcataagtctttgccacgagtgtgttgagaacaacaaacatgaagatattgtattgtatgctattaaac |
18787085 |
T |
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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 18786899 - 18786949
Alignment:
| Q |
4 |
tcgaaaaatatgtacagcttctgcatatatattgtgtaagaattaaggaag |
54 |
Q |
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| T |
18786899 |
tcgaacaatatgtacagcttctgaatatatattgtgttagaaataaggaag |
18786949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 252 - 282
Target Start/End: Original strand, 18787149 - 18787179
Alignment:
| Q |
252 |
ctgcagctgtgtcaaatacgagcatcctgtt |
282 |
Q |
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| T |
18787149 |
ctgcagctgtgtcaaatacgagcatcctgtt |
18787179 |
T |
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