View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533_low_1 (Length: 462)
Name: NF9533_low_1
Description: NF9533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 5 - 451
Target Start/End: Original strand, 35449606 - 35450052
Alignment:
| Q |
5 |
cgaggagtgtctgtgcttcataactttacttacatgttttttgcaatttgagtactaatgattcttaattgttatgcagtcaatggaggatttgagacaa |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35449606 |
cgaggagtgtctgtgcttcataactttacttacatgttttttgcaatttgagtactaatgattcttaattgttatgcagtcaatggaggatttgagacaa |
35449705 |
T |
|
| Q |
105 |
tcacttctatacacaactttagagcttgaacaaacaagagtaacagcacaagaagagctcacnnnnnnngatgaacaactaatgaaccttaaagatctaa |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
35449706 |
tcacttctatacacaactttagagcttgaacaaacaagagtaacagcacaagaagaactcacaaaaaaagatgaacaactaatgaaccttaaagatctaa |
35449805 |
T |
|
| Q |
205 |
tcaacaacatcattagagaaagagatgaagcacaagaaaaatgtgaaagacttctcttggaaaagctagttttccatcaacaacaaaatgctccactttc |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35449806 |
tcaacaacatcattagagaaagagatgaagcacaagaaaaatgtcaaagacttctcttggaaaagctagttttccatcaacaacaaaatgatccactttc |
35449905 |
T |
|
| Q |
305 |
cggagtttcaagcattgaagatgaacaagttacaagaaaaggaattgactcaaacaatggtttttctttgtcttcatcagattgtgaagaaagcattgtt |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35449906 |
cggagtttcaagcattgaagatgaacaagttacaagaaaaggaattgactcaaacaatggtttttctttgtcttcttcagattgtgaagaaagcattgtt |
35450005 |
T |
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| Q |
405 |
tcttcaccaattattgatcaatcaatgattgaagtactaacaccaaa |
451 |
Q |
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| T |
35450006 |
tcttcaccaattattgatcaatcaatgattgaagtactaacaccaaa |
35450052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 126 - 287
Target Start/End: Complemental strand, 21010794 - 21010633
Alignment:
| Q |
126 |
gagcttgaacaaacaagagtaacagcacaagaagagctcacnnnnnnngatgaacaactaatgaaccttaaagatctaatcaacaacatcattagagaaa |
225 |
Q |
| |
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||||| ||||||||||||||||||| ||||||||| || | |||||||||||| ||||| ||||| || ||||||| | || ||||||| |
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| T |
21010794 |
gagctagaacaaacaagagtaacagtacaagaagaactaagaaaaagagatgaacaactacataacctaaaagaacttttcaacaaagttataagagaaa |
21010695 |
T |
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| Q |
226 |
gagatgaagcacaagaaaaatgtgaaagacttctcttggaaaagctagttttccatcaacaa |
287 |
Q |
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|||||||||||||||||||||| |||||||| |||| |||||| || ||||||| |||||| |
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| T |
21010694 |
gagatgaagcacaagaaaaatgccaaagacttttcttagaaaagttacttttccaacaacaa |
21010633 |
T |
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