View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533_low_11 (Length: 228)
Name: NF9533_low_11
Description: NF9533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 12 - 207
Target Start/End: Original strand, 47906057 - 47906252
Alignment:
| Q |
12 |
agcagagagggagggtacgaacatgatcattatctttgaattcagtcaagcaaacggaacaagtttcttgttcagacttaatagtagtattgtagatgaa |
111 |
Q |
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| T |
47906057 |
agcaaagagggagggtacgaacatgatcattatctttgaattcagtcaagcaaacggaacaagtttcttgttcagacttagtagtagtattgtagatgaa |
47906156 |
T |
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| Q |
112 |
agacggaataagatttataacaaactcatgtaagccctgtggagcctcctcctccaccaccatcattgtgtcaacgtcatatcgaaggttctccct |
207 |
Q |
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| T |
47906157 |
agacggaataagatttataacaaactcatgtaagccctgtggagcctcctcctcctccaccatcattgtgtcgacgtcatatcgaaggttctccct |
47906252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 12 - 207
Target Start/End: Original strand, 47908829 - 47909024
Alignment:
| Q |
12 |
agcagagagggagggtacgaacatgatcattatctttgaattcagtcaagcaaacggaacaagtttcttgttcagacttaatagtagtattgtagatgaa |
111 |
Q |
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| T |
47908829 |
agcaaagagggagggtacgaacatgatcattatctttgaattcagtcaagcaaacggaacaagtttcttgttcagacttagtagtagtattgtagatgaa |
47908928 |
T |
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| Q |
112 |
agacggaataagatttataacaaactcatgtaagccctgtggagcctcctcctccaccaccatcattgtgtcaacgtcatatcgaaggttctccct |
207 |
Q |
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| T |
47908929 |
agacagaataagatttataacaaactcatgtaagccctgtggagcctcctcctcctccaccattattgtgtcgacgtcatatcgaaggttctccct |
47909024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 166
Target Start/End: Original strand, 47899483 - 47899545
Alignment:
| Q |
104 |
tagatgaaagacggaataagatttataacaaactcatgtaagccctgtggagcctcctcctcc |
166 |
Q |
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| T |
47899483 |
tagatgaaggacggaatagcatatataacagactcatctaagccatgtggagcctcctcctcc |
47899545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 47911326 - 47911386
Alignment:
| Q |
102 |
tgtagatgaaagacggaataagatttataacaaactcatgtaagccctgtggagcctcctc |
162 |
Q |
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| T |
47911326 |
tgtagatgaaagacggaatagcttttataacagactcgtctaagccctgtgcaacctcctc |
47911386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 155
Target Start/End: Original strand, 39403216 - 39403346
Alignment:
| Q |
25 |
ggtacgaacatgatcattatctttgaattcagtcaagcaaacggaacaagtttcttgttcagacttaatagtagtattgtagatgaaagacggaataaga |
124 |
Q |
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| T |
39403216 |
ggtacgaactcgatcattatctatgaattcaaccaagcaaactgaacacgtttctttttcagactaagtagcagtattgtagatgaaagatggtatatga |
39403315 |
T |
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| Q |
125 |
tttataacaaactcatgtaagccctgtggag |
155 |
Q |
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| T |
39403316 |
tttataacaaactcatgtaagccctgtggag |
39403346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 31209554 - 31209493
Alignment:
| Q |
104 |
tagatgaaagacggaataagatttataacaaactcatgtaagccctgtggagcctcctcctc |
165 |
Q |
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| T |
31209554 |
tagatgaaggacggaatagcatatataacagactcatctaagccatgtggagcctcctcctc |
31209493 |
T |
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