View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9533_low_12 (Length: 228)
Name: NF9533_low_12
Description: NF9533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533_low_12 |
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| [»] scaffold0009 (2 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 40467 - 40240
Alignment:
| Q |
1 |
aaacaaaaatcaaacaacatacgtaatattgatgatacaaaaagaggaaggatgcttctacctgaagcacattcagaaactgcacattataaacagctct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40467 |
aaacaaaaatcaaacaacatacgtaatattgatgatacaaaaagaggaaggatgcttctacctgaagcacattcagaaactgcacattataaacagctct |
40368 |
T |
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| Q |
101 |
aaaaggaacttcgaataaacgaaaattagctttgataagattcgataacaagggtttttcaaatttctctatcgctgtactacggacattcagtttaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40367 |
aaaaggaacttcgaataaacgaaaattagctttgatgagattcgataacaagggtttttcaaagttctctatcgctgtactacggacattcagtttaata |
40268 |
T |
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| Q |
201 |
tataaagttttcaaatcctccaatttgg |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
40267 |
tataaagttttcaaatcctccaatttgg |
40240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 33849 - 33613
Alignment:
| Q |
1 |
aaacaaaaatcaaacaacatacgtaatattgatgatacaaaaagaggaa-ggatgcttc--------tacctgaagcacattcagaaactgcacattata |
91 |
Q |
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|||||||||||||||||||||||||||| ||||||||| |||| | || ||||||||| ||||| ||| ||||| ||||||||||||||||| |
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| T |
33849 |
aaacaaaaatcaaacaacatacgtaatagtgatgataccaaaaaaaaaatggatgcttcatatataatacctcaagtacatttagaaactgcacattata |
33750 |
T |
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| Q |
92 |
aacagctctaaaaggaacttcgaataaacgaaaattagctttgataagattcgataacaagggtttttcaaatttctctatcgctgtactacggacattc |
191 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||| ||||| || || |||| |
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| T |
33749 |
aactgctctaaaaggaacttcgaataaacgaaaattagctttgatgagattggataacaagggtttttcaaagttctctatcactgtaacaccgatattc |
33650 |
T |
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| Q |
192 |
agtttaatatataaagttttcaaatcctccaatttgg |
228 |
Q |
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|||| ||||||||||||||||||||||||||||||| |
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| T |
33649 |
agttggatatataaagttttcaaatcctccaatttgg |
33613 |
T |
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